myRT

myRT report for GCA_009494935.1_ASM949493v1

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Seq: VZBA01000031.1 Prevotella copri strain iAK264 NODE_18_length_66490_cov_30.0681_ID_35, whole genome shotgun sequence (66489 bp)
Overview 1 RT 1: 63505-66288 bp Neighborhood of RT #1 [63505, 66305] Avd_like RVT-DGRs XerC Feature: gene Location: 63505-63900 bp Feature: domain Description: Avd_like Location: 63541-63859 bp Feature: domain Description: Avd_like Location: 63541 -63859 bp Feature: gene Location: 63973-64140 bp Feature: gene Location: 64167-65486 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64353-65043 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64353-65043 bp Feature: gene Location: 65529-66305 bp Feature: domain Description: XerC Location: 65580-66288 bp Feature: domain Description: XerC Location: 65580-66288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBA01000112.1 Prevotella copri strain iAK264 NODE_38_length_28203_cov_42.4429_ID_75, whole genome shotgun sequence (28203 bp)
Overview 1 RT 1: 24726-27980 bp Neighborhood of RT #1 [24726, 27980] PRK09375 RVT-GII Feature: gene Location: 24726-25727 bp Feature: domain Description: PRK09375 Location: 24786-25722 bp Feature: domain Description: PRK09375 Location: 2 4786-2 572 2 bp Feature: gene Location: 26039-26197 bp Feature: gene Location: 26578-27687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26920-27538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 692 0-2 7538 bp Feature: gene Location: 27786-27980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII

Seq: VZBA01000075.1 Prevotella copri strain iAK264 NODE_40_length_24033_cov_42.263_ID_79, whole genome shotgun sequence (24033 bp)
Overview 1 RT 1: 4907-9617 bp Neighborhood of RT #1 [4907, 9637] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 4907-5701 bp Feature: domain Description: FldA Location: 4916-5192 bp Feature: domain Description: FldA Location: 4916-5192 bp Feature: domain Description: NapF Location: 5420-5642 bp Feature: domain Description: NapF Location: 5420-5642 bp Feature: gene Location: 6203-6367 bp Feature: gene Location: 6364-7443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6568-7225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6568-7225 bp Feature: gene Location: 7612-8505 bp Feature: domain Description: LysR Location: 7627-8482 bp Feature: domain Description: LysR Location: 7627-8482 bp Feature: gene Location: 8591-9637 bp Feature: domain Description: YeiH Location: 8609-9617 bp Feature: domain Description: YeiH Location: 8609-9617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZBA01000113.1 Prevotella copri strain iAK264 NODE_4_length_117539_cov_39.6919_ID_7, whole genome shotgun sequence (117537 bp)
Overview 1 RT 1: 61394-68978 bp Neighborhood of RT #1 [61394, 68989] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61394-63778 bp Feature: domain Description: Glyco_hydro_127 Location: 61493-63026 bp Feature: domain Description: Glyco_hydro_127 Location: 614 93-63026 bp Feature: domain Description: DUF4986 Location: 63041-63287 bp Feature: domain Description: DUF4 986 Location: 6304 1-63287 bp Feature: gene Location: 63879-65225 bp Feature: domain Description: GH43_Xsa43E-like Location: 63978-64770 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 63978-64 770 bp Feature: domain Description: CBM6_xylanase-like Location: 64833-65217 bp Feature: domain Description: CBM6_xylanase-like Location: 64 833-65217 bp Feature: gene Location: 65542-66945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65884-66502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65884 -66502 bp Feature: domain Description: GIIM Note: maturase Location: 66556-66766 bp Feature: domain Description: GIIM Note: maturase Location: 66556-66766 bp Feature: gene Location: 67358-67513 bp Feature: gene Location: 67820-68989 bp Feature: domain Description: COG1373 Location: 67916-68978 bp Feature: domain Description: COG1373 Location: 67916-68978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VZBA01000034.1 Prevotella copri strain iAK264 NODE_99_length_1732_cov_66.387_ID_197, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235 -1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)