myRT

myRT report for GCA_009494975.1_ASM949497v1

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Seq: VZAY01000004.1 Prevotella copri strain iAK2615 NODE_20_length_64404_cov_49.4156_ID_39, whole genome shotgun sequence (64406 bp)
Overview 1 RT 1: 61422-64205 bp Neighborhood of RT #1 [61422, 64222] Avd_like RVT-DGRs XerC Feature: gene Location: 61422-61817 bp Feature: domain Description: Avd_like Location: 61458-61776 bp Feature: domain Description: Avd_like Location: 61 458-61 776 bp Feature: gene Location: 61890-62057 bp Feature: gene Location: 62084-63403 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62270-62960 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62270-62960 bp Feature: gene Location: 63446-64222 bp Feature: domain Description: XerC Location: 63497-64205 bp Feature: domain Description: XerC Location: 63497-64205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZAY01000006.1 Prevotella copri strain iAK2615 NODE_30_length_49483_cov_81.6746_ID_59, whole genome shotgun sequence (49483 bp)
Overview 1 RT 1: 24841-29368 bp Neighborhood of RT #1 [24841, 29388] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24841-25842 bp Feature: domain Description: PRK09375 Location: 24901-25837 bp Feature: domain Description: PRK09375 Location: 2 4901-2 5837 bp Feature: gene Location: 26154-26312 bp Feature: gene Location: 26693-27802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27035-27653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7035-2 7653 bp Feature: gene Location: 27901-28095 bp Feature: gene Location: 28303-29388 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 28318-29368 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 8318-2 9368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZAY01000016.1 Prevotella copri strain iAK2615 NODE_37_length_30579_cov_96.118_ID_73, whole genome shotgun sequence (30579 bp)
Overview 1 RT 1: 11453-16163 bp Neighborhood of RT #1 [11453, 16183] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11453-12247 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: FldA Location: 11462-1173 8 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: gene Location: 12749-12913 bp Feature: gene Location: 12910-13989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 114-13 771 bp Feature: gene Location: 14074-15051 bp Feature: domain Description: LysR Location: 14173-15028 bp Feature: domain Description: LysR Location: 14173 -15028 bp Feature: gene Location: 15137-16183 bp Feature: domain Description: YeiH Location: 15155-16163 bp Feature: domain Description: YeiH Location: 15155-16163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZAY01000001.1 Prevotella copri strain iAK2615 NODE_6_length_98383_cov_63.7004_ID_11, whole genome shotgun sequence (98383 bp)
Overview 1 RT 1: 29409-36513 bp Neighborhood of RT #1 [29409, 37004] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 29409-30578 bp Feature: domain Description: COG1373 Location: 29505-30567 bp Feature: domain Description: COG1373 Location: 29505-30567 bp Feature: gene Location: 30885-31040 bp Feature: gene Location: 31453-32856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795-32413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795-324 13 bp Feature: domain Description: GIIM Note: maturase Location: 32467-32677 bp Feature: domain Description: GIIM Note: maturase Location: 324 67-32677 bp Feature: gene Location: 33173-34519 bp Feature: domain Description: GH43_Xsa43E-like Location: 33272-34064 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 33272-34 064 bp Feature: domain Description: CBM6_xylanase-like Location: 34127-34511 bp Feature: domain Description: CBM6_xylanase-like Location: 34 127-34 511 bp Feature: gene Location: 34620-37004 bp Feature: domain Description: Glyco_hydro_127 Location: 34719-36252 bp Feature: domain Description: Glyco_hydro_127 Location: 34 719-36252 bp Feature: domain Description: DUF4986 Location: 36267-36513 bp Feature: domain Description: DUF4 986 Location: 36267-36513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: VZAY01000070.1 Prevotella copri strain iAK2615 NODE_79_length_1831_cov_119.421_ID_157, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 104-1547 bp Neighborhood of RT #1 [104, 1726] RVT-GII GIIM Feature: gene Location: 104-274 bp Feature: gene Location: 320-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: domain Description: GIIM Note: maturase Location: 1334-1547 bp Feature: domain Description: GIIM Note: maturase Location: 1334-15 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)