myRT

myRT report for GCA_009495135.1_ASM949513v1

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Seq: VZAQ01000087.1 Prevotella copri strain iAK263 NODE_14_length_80390_cov_182.572_ID_27, whole genome shotgun sequence (80390 bp)
Overview 1 RT 1: 11487-18591 bp Neighborhood of RT #1 [11487, 19082] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 11487-12656 bp Feature: domain Description: COG1373 Location: 11583-12645 bp Feature: domain Description: COG1 373 Location: 1 1 583-1 2645 bp Feature: gene Location: 12963-13118 bp Feature: gene Location: 13531-14934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13873-14491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3873-1 4491 bp Feature: domain Description: GIIM Note: maturase Location: 14545-14755 bp Feature: domain Description: GIIM Note: maturase Location: 1 4545-1 4755 bp Feature: gene Location: 15266-16597 bp Feature: domain Description: GH43_Xsa43E-like Location: 15350-16142 bp Feature: domain Description: GH43_Xsa43E-like Location: 1 5350-1 61 42 bp Feature: domain Description: CBM6_xylanase-like Location: 16205-16589 bp Feature: domain Description: CBM6_xylanase-like Location: 1 6205-1 6589 bp Feature: gene Location: 16698-19082 bp Feature: domain Description: Glyco_hydro_127 Location: 16797-18330 bp Feature: domain Description: Glyco_hydro_1 27 Location: 1 6797-1 8330 bp Feature: domain Description: DUF4986 Location: 18345-18591 bp Feature: domain Description: DUF4986 Location: 1 8345-1 8591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: VZAQ01000107.1 Prevotella copri strain iAK263 NODE_20_length_62840_cov_152.053_ID_39, whole genome shotgun sequence (62840 bp)
Overview 1 RT 1: 59856-62639 bp Neighborhood of RT #1 [59856, 62656] Avd_like RVT-DGRs XerC Feature: gene Location: 59856-60251 bp Feature: domain Description: Avd_like Location: 59892-60210 bp Feature: domain Description: Avd_like Location: 59892 -602 10 bp Feature: gene Location: 60324-60491 bp Feature: gene Location: 60518-61837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60704-61394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60704-61394 bp Feature: gene Location: 61880-62656 bp Feature: domain Description: XerC Location: 61931-62639 bp Feature: domain Description: XerC Location: 61931-62 639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZAQ01000038.1 Prevotella copri strain iAK263 NODE_29_length_46650_cov_256.167_ID_57, whole genome shotgun sequence (46650 bp)
Overview 1 RT 1: 24841-29368 bp Neighborhood of RT #1 [24841, 29388] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24841-25842 bp Feature: domain Description: PRK09375 Location: 24901-25837 bp Feature: domain Description: PRK093 75 Location: 24901-2583 7 bp Feature: gene Location: 26154-26312 bp Feature: gene Location: 26693-27802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27035-27653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703 5-27653 bp Feature: gene Location: 27901-28095 bp Feature: gene Location: 28303-29388 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 28318-29368 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 283 18-293 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZAQ01000109.1 Prevotella copri strain iAK263 NODE_35_length_30582_cov_248.453_ID_69, whole genome shotgun sequence (30582 bp)
Overview 1 RT 1: 14397-19569 bp Neighborhood of RT #1 [14397, 19569] YeiH LysR RVT-GII FldA NapF Feature: gene Location: 14397-15443 bp Feature: domain Description: YeiH Location: 14415-15423 bp Feature: domain Description: YeiH Location: 14 4 15-154 23 bp Feature: gene Location: 15529-16506 bp Feature: domain Description: LysR Location: 15628-16483 bp Feature: domain Description: LysR Location: 15628-164 83 bp Feature: gene Location: 16591-17670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16795-17452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16795-174 52 bp Feature: gene Location: 18333-19127 bp Feature: domain Description: FldA Location: 18342-18618 bp Feature: domain Description: FldA Location: 1834 2-18618 bp Feature: domain Description: NapF Location: 18846-19068 bp Feature: domain Description: NapF Location: 1884 6-19068 bp Feature: gene Location: 19132-19569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeiH (COG2855), LysR (COG0583), RVT-GII, FldA (COG0716), NapF (COG1145)

Seq: VZAQ01000111.1 Prevotella copri strain iAK263 NODE_95_length_1732_cov_342.581_ID_189, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235 -1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)