myRT

myRT report for GCA_009495155.1_ASM949515v1

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Seq: VZAP01000088.1 Prevotella copri strain iAU3127 NODE_10_length_63545_cov_10.5839_ID_35, whole genome shotgun sequence (63545 bp)
Overview 1 RT 1: 50346-56814 bp Neighborhood of RT #1 [50346, 56819] DUF5106 TlpA_like_family TlpA_like_family RVT-GII GIIM GH25_YegX-like PRK07085 Feature: gene Location: 50346-51221 bp Feature: domain Description: DUF5106 Location: 50469-50889 bp Feature: domain Description: DUF51 06 Location: 50469-50889 bp Feature: domain Description: TlpA_like_family Location: 50916-51033 bp Feature: domain Description: TlpA_like_family Location: 5091 6-51 033 bp Feature: domain Description: TlpA_like_family Location: 51078-51159 bp Feature: domain Description: TlpA_like_family Location: 51 078-51 1 59 bp Feature: gene Location: 51386-51868 bp Feature: gene Location: 52339-53745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52681-53299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52681 -53299 bp Feature: domain Description: GIIM Note: maturase Location: 53353-53563 bp Feature: domain Description: GIIM Note: maturase Location: 53353-53563 bp Feature: gene Location: 54252-55145 bp Feature: domain Description: GH25_YegX-like Location: 54513-55080 bp Feature: domain Description: GH25_YegX-like Location: 5451 3-55080 bp Feature: gene Location: 55170-56819 bp Feature: domain Description: PRK07085 Location: 55173-56814 bp Feature: domain Description: PRK07085 Location: 551 73-5681 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), TlpA_like_family (cd02966), RVT-GII, GIIM (pfam08388), GH25_YegX-like (cd06524), PRK07085 (diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional)

Seq: VZAP01000060.1 Prevotella copri strain iAU3127 NODE_116_length_6355_cov_27.3249_ID_251, whole genome shotgun sequence (6355 bp)
Overview 1 RT 1: 3893-6112 bp Neighborhood of RT #1 [3893, 6294] RVT-GII GIIM Feature: gene Location: 3893-4048 bp Feature: gene Location: 4677-4814 bp Feature: gene Location: 4888-6294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5230-5848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 30-5848 bp Feature: domain Description: GIIM Note: maturase Location: 5902-6112 bp Feature: domain Description: GIIM Note: maturase Location: 5902 -6112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZAP01000022.1 Prevotella copri strain iAU3127 NODE_118_length_6245_cov_29.6751_ID_253, whole genome shotgun sequence (6241 bp)
Overview 1 RT 1: 3661-6002 bp Neighborhood of RT #1 [3661, 6184] HTH_Tnp_IS630 RVT-GII GIIM Feature: gene Location: 3661-4290 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3730-3949 bp Feature: domain Description: HTH_Tnp_IS63 0 Location: 3 73 0-3 949 bp Feature: gene Location: 4567-4704 bp Feature: gene Location: 4778-6184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5120-5738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5120-573 8 bp Feature: domain Description: GIIM Note: maturase Location: 5792-6002 bp Feature: domain Description: GIIM Note: maturase Location: 5792-6002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), RVT-GII, GIIM (pfam08388)

Seq: VZAP01000165.1 Prevotella copri strain iAU3127 NODE_161_length_2215_cov_69.2079_ID_327, whole genome shotgun sequence (2215 bp)
Overview 1 RT 1: 2-1972 bp Neighborhood of RT #1 [2, 2154] AAA-ATPase_like RVT-GII GIIM Feature: gene Location: 2-370 bp Feature: domain Description: AAA-ATPase_like Location: 5-344 bp Feature: domain Description: AAA-ATPase_like Location: 5-34 4 bp Feature: gene Location: 537-674 bp Feature: gene Location: 748-2154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090-1708 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1972 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), RVT-GII, GIIM (pfam08388)

Seq: VZAP01000186.1 Prevotella copri strain iAU3127 NODE_164_length_1925_cov_33.354_ID_331, whole genome shotgun sequence (1926 bp)
Overview 1 RT 1: 94-1315 bp Neighborhood of RT #1 [94, 1500] RVT-GII GIIM Feature: gene Location: 94-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-105 4 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1315 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZAP01000071.1 Prevotella copri strain iAU3127 NODE_17_length_52182_cov_7.18848_ID_59, whole genome shotgun sequence (52182 bp)
Overview 1 RT 1: 24622-29424 bp Neighborhood of RT #1 [24622, 29424] RVT-DGRs Feature: gene Location: 24622-25011 bp Feature: gene Location: 25012-25821 bp Feature: gene Location: 25884-26618 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26088-26592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26 088-26 592 bp Feature: gene Location: 27179-28603 bp Feature: gene Location: 28609-29424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZAP01000155.1 Prevotella copri strain iAU3127 NODE_28_length_43717_cov_10.0992_ID_85, whole genome shotgun sequence (43717 bp)
Overview 1 RT 1: 40727-43474 bp Neighborhood of RT #1 [40727, 43656] gapA RVT-GII GIIM Feature: gene Location: 40727-41758 bp Feature: domain Description: gapA Location: 40733-41741 bp Feature: domain Description: gapA Location: 407 33-417 41 bp Feature: gene Location: 42039-42176 bp Feature: gene Location: 42250-43656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42592-43210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42592-43210 bp Feature: domain Description: GIIM Note: maturase Location: 43264-43474 bp Feature: domain Description: GIIM Note: maturase Location: 43264-4347 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gapA (PRK15425), RVT-GII, GIIM (pfam08388)

Seq: VZAP01000154.1 Prevotella copri strain iAU3127 NODE_33_length_40847_cov_11.612_ID_91, whole genome shotgun sequence (40847 bp)
Overview 1 RT 1: 37883-40604 bp Neighborhood of RT #1 [37883, 40786] PRK07084 RVT-GII GIIM Feature: gene Location: 37883-38896 bp Feature: domain Description: PRK07084 Location: 37892-38882 bp Feature: domain Description: PRK0708 4 Location: 378 92-38 8 8 2 bp Feature: gene Location: 39169-39306 bp Feature: gene Location: 39380-40786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39722-40340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39722-40340 bp Feature: domain Description: GIIM Note: maturase Location: 40394-40604 bp Feature: domain Description: GIIM Note: maturase Location: 40394-40604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07084 (class II fructose-1,6-bisphosphate aldolase), RVT-GII, GIIM (pfam08388)

Seq: VZAP01000015.1 Prevotella copri strain iAU3127 NODE_35_length_40125_cov_7.09908_ID_93, whole genome shotgun sequence (40125 bp)
Overview 1 RT 1: 35392-39784 bp Neighborhood of RT #1 [35392, 39784] RVT-DGRs Feature: gene Location: 35392-36153 bp Feature: gene Location: 36189-37700 bp Feature: gene Location: 37818-39389 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38028-38769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38028-38769 bp Feature: gene Location: 39392-39784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZAP01000008.1 Prevotella copri strain iAU3127 NODE_46_length_32278_cov_11.8755_ID_109, whole genome shotgun sequence (32278 bp)
Overview 1 RT 1: 62-5578 bp Neighborhood of RT #1 [62, 5578] RVT-GII GIIM PRK15098 Feature: gene Location: 62-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-10 22 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1286 bp Feature: domain Description: GIIM Note: maturase Location: 10 76-1286 bp Feature: gene Location: 2203-4521 bp Feature: domain Description: PRK15098 Location: 2242-4483 bp Feature: domain Description: PRK15098 Location: 2242-4483 bp Feature: gene Location: 4574-5578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX)

Seq: VZAP01000013.1 Prevotella copri strain iAU3127 NODE_51_length_27759_cov_11.4293_ID_121, whole genome shotgun sequence (27759 bp)
Overview 1 RT 1: 17000-24642 bp Neighborhood of RT #1 [17000, 24642] COG3943 RVT-UG3 RVT-UG8 KAP_NTPase Feature: gene Location: 17000-17932 bp Feature: domain Description: COG3943 Location: 17045-17489 bp Feature: domain Description: COG3943 Location: 17045-17489 bp Feature: gene Location: 17953-18093 bp Feature: gene Location: 18149-19681 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18647-19178 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18647-19178 bp Feature: gene Location: 19650-21938 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 20262-20715 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 20262-20715 bp Feature: gene Location: 22103-23908 bp Feature: domain Description: KAP_NTPase Location: 22157-23210 bp Feature: domain Description: KAP_NTPase Location: 22157-23210 bp Feature: gene Location: 23920-24642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-UG3, RVT-UG8, KAP_NTPase (pfam07693)

Seq: VZAP01000057.1 Prevotella copri strain iAU3127 NODE_55_length_27110_cov_12.0954_ID_127, whole genome shotgun sequence (27110 bp)
Overview 1 RT 1: 24500-26867 bp Neighborhood of RT #1 [24500, 27049] PLPDE_III_YBL036c_like RVT-GII GIIM Feature: gene Location: 24500-25174 bp Feature: domain Description: PLPDE_III_YBL036c_like Location: 24542-25160 bp Feature: domain Description: PLPDE_III_YBL036c_like Location: 24542-25160 bp Feature: gene Location: 25432-25569 bp Feature: gene Location: 25643-27049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25985-26603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25985-26603 bp Feature: domain Description: GIIM Note: maturase Location: 26657-26867 bp Feature: domain Description: GIIM Note: maturase Location: 26657-26867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLPDE_III_YBL036c_like (cd00635), RVT-GII, GIIM (pfam08388)

Seq: VZAP01000081.1 Prevotella copri strain iAU3127 NODE_96_length_9139_cov_22.3402_ID_209, whole genome shotgun sequence (9139 bp)
Overview 1 RT 1: 62-6565 bp Neighborhood of RT #1 [62, 6624] RVT-GII GIIM CarboxypepD_reg FepA Enpp Feature: gene Location: 62-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1022 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1286 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1286 bp Feature: gene Location: 1975-5181 bp Feature: domain Description: CarboxypepD_reg Location: 2059-2296 bp Feature: domain Description: CarboxypepD_reg Location: 2059-2296 bp Feature: domain Description: FepA Location: 2299-3754 bp Feature: domain Description: FepA Location: 2299-3754 bp Feature: gene Location: 5431-6624 bp Feature: domain Description: Enpp Location: 5506-6565 bp Feature: domain Description: Enpp Location: 5506-6565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CarboxypepD_reg (pfam13620), FepA (COG4771), Enpp (cd16018)

Seq: VZAP01000173.1 Prevotella copri strain iAU3127 NODE_9_length_69770_cov_9.21981_ID_33, whole genome shotgun sequence (69770 bp)
Overview 1 RT 1: 62-5673 bp 2 RT 2: 23409-29580 bp Neighborhood of RT #1 [62, 5861] RVT-GII GIIM TPR TPR PRK05560 Neighborhood of RT #2 [23409, 29580] AAA-ATPase_like RVT-GII GIIM DegT_DnrJ_EryC1 Feature: gene Location: 62-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404-1022 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1286 bp Feature: domain Description: GIIM Note: maturase Location: 1076-1286 bp Feature: gene Location: 1962-3170 bp Feature: domain Description: TPR Location: 2763-2979 bp Feature: domain Description: TPR Location: 2763-2979 bp Feature: domain Description: TPR Location: 3021-3093 bp Feature: domain Description: TPR Location: 3021-3093 bp Feature: gene Location: 3225-5861 bp Feature: domain Description: PRK05560 Location: 3255-5673 bp Feature: domain Description: PRK05560 Location: 3255-5673 bp Feature: gene Location: 23409-24533 bp Feature: domain Description: AAA-ATPase_like Location: 23436-24255 bp Feature: domain Description: AAA-ATPase_like Location: 23436-24255 bp Feature: gene Location: 24799-24984 bp Feature: gene Location: 25215-26618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25557-26175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25557-26175 bp Feature: domain Description: GIIM Note: maturase Location: 26229-26439 bp Feature: domain Description: GIIM Note: maturase Location: 26229-26439 bp Feature: gene Location: 27701-28864 bp Feature: domain Description: DegT_DnrJ_EryC1 Location: 27764-28841 bp Feature: domain Description: DegT_DnrJ_EryC1 Location: 27764-28841 bp Feature: gene Location: 29119-29580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TPR (smart00028), PRK05560 (DNA gyrase subunit A; Validated), AAA-ATPase_like (pfam09820), DegT_DnrJ_EryC1 (pfam01041)