myRT

myRT report for GCA_009495205.1_ASM949520v1

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Seq: VZAO01000004.1 Prevotella copri strain iAK268 NODE_115_length_8573_cov_5.07478_ID_317, whole genome shotgun sequence (8573 bp)
Overview 1 RT 1: 18-2414 bp Neighborhood of RT #1 [18, 2414] SLATT_5 RVT-UG17 Feature: gene Location: 18-239 bp Feature: domain Description: SLATT_5 Location: 24-183 bp Feature: domain Description: SLATT_5 Location: 24-1 83 bp Feature: gene Location: 377-1759 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 596-1211 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 596-1 21 1 bp Feature: gene Location: 1922-2098 bp Feature: gene Location: 2271-2414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: VZAO01000147.1 Prevotella copri strain iAK268 NODE_38_length_27464_cov_6.69101_ID_175, whole genome shotgun sequence (27464 bp)
Overview 1 RT 1: 17630-22819 bp Neighborhood of RT #1 [17630, 22878] PRK09375 RVT-GII GIIM GT9_LPS_heptosyltransferase DUF4254 Feature: gene Location: 17630-18631 bp Feature: domain Description: PRK09375 Location: 17690-18626 bp Feature: domain Description: PRK09375 Location: 17690-1862 6 bp Feature: gene Location: 18943-19101 bp Feature: gene Location: 19482-20888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19824-20442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982 4-2 0442 bp Feature: domain Description: GIIM Note: maturase Location: 20499-20700 bp Feature: domain Description: GIIM Note: maturase Location: 2 0499-2 0700 bp Feature: gene Location: 21095-22180 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 21110-22160 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 1110-2 2 160 bp Feature: gene Location: 22276-22878 bp Feature: domain Description: DUF4254 Location: 22393-22819 bp Feature: domain Description: DUF42 54 Location: 2 2 393-2 2 819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GIIM (pfam08388), GT9_LPS_heptosyltransferase (cd03789), DUF4254 (pfam14063)

Seq: VZAO01000092.1 Prevotella copri strain iAK268 NODE_5_length_71986_cov_5.3976_ID_17, whole genome shotgun sequence (71986 bp)
Overview 1 RT 1: 14043-19478 bp Neighborhood of RT #1 [14043, 19678] RVT-GII GIIM NptA thrS UMPK_like Feature: gene Location: 14043-14198 bp Feature: gene Location: 14387-14557 bp Feature: gene Location: 14603-16009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14948-15563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14948-15563 bp Feature: domain Description: GIIM Note: maturase Location: 15617-15830 bp Feature: domain Description: GIIM Note: maturase Location: 15617-1583 0 bp Feature: gene Location: 16135-17844 bp Feature: domain Description: NptA Location: 16150-17821 bp Feature: domain Description: NptA Location: 16150-17821 bp Feature: gene Location: 18017-19678 bp Feature: domain Description: thrS Location: 18032-18623 bp Feature: domain Description: thrS Location: 1803 2-18623 bp Feature: domain Description: UMPK_like Location: 18887-19478 bp Feature: domain Description: UMPK_like Location: 18887-19478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NptA (COG1283), thrS (TIGR00418), UMPK_like (cd02028)