myRT

myRT report for GCA_009495265.1_ASM949526v1

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Seq: VZAJ01000078.1 Prevotella copri strain iAK266 NODE_100_length_1732_cov_13.0644_ID_205, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1 1 81 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1 235-1 448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZAJ01000023.1 Prevotella copri strain iAK266 NODE_26_length_49369_cov_8.68922_ID_63, whole genome shotgun sequence (49369 bp)
Overview 1 RT 1: 20097-25866 bp Neighborhood of RT #1 [20097, 25937] GT9_LPS_heptosyltransferase RVT-GII PRK09375 WcaA Feature: gene Location: 20097-21182 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 20112-21162 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 0112 -2 1162 bp Feature: gene Location: 21390-21662 bp Feature: gene Location: 21683-22792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22025-22643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 02 5-2 2 643 bp Feature: gene Location: 23643-24644 bp Feature: domain Description: PRK09375 Location: 23703-24639 bp Feature: domain Description: PRK09375 Location: 2 3703-2 4639 bp Feature: gene Location: 24966-25937 bp Feature: domain Description: WcaA Location: 24999-25866 bp Feature: domain Description: WcaA Location: 2 4999-2 5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), RVT-GII, PRK09375 (quinolinate synthase NadA), WcaA (TIGR04017)

Seq: VZAJ01000017.1 Prevotella copri strain iAK266 NODE_36_length_32276_cov_5.86658_ID_83, whole genome shotgun sequence (32276 bp)
Overview 1 RT 1: 29292-32075 bp Neighborhood of RT #1 [29292, 32092] Avd_like RVT-DGRs XerC Feature: gene Location: 29292-29687 bp Feature: domain Description: Avd_like Location: 29328-29646 bp Feature: domain Description: Avd_like Location: 293 28-29646 bp Feature: gene Location: 29760-29927 bp Feature: gene Location: 29954-31273 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30140-30830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 0140-3 083 0 bp Feature: gene Location: 31316-32092 bp Feature: domain Description: XerC Location: 31367-32075 bp Feature: domain Description: XerC Location: 3 13 67-3 2075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZAJ01000093.1 Prevotella copri strain iAK266 NODE_39_length_29479_cov_11.8461_ID_93, whole genome shotgun sequence (29479 bp)
Overview 1 RT 1: 11453-16163 bp Neighborhood of RT #1 [11453, 16183] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11453-12247 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: FldA Location: 114 62-11738 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: gene Location: 12749-12913 bp Feature: gene Location: 12910-13989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114 -13771 bp Feature: gene Location: 14074-15051 bp Feature: domain Description: LysR Location: 14173-15028 bp Feature: domain Description: LysR Location: 14 173-15028 bp Feature: gene Location: 15137-16183 bp Feature: domain Description: YeiH Location: 15155-16163 bp Feature: domain Description: YeiH Location: 15155-16163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZAJ01000055.1 Prevotella copri strain iAK266 NODE_7_length_98387_cov_7.11723_ID_19, whole genome shotgun sequence (98387 bp)
Overview 1 RT 1: 29409-36513 bp Neighborhood of RT #1 [29409, 37004] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 29409-30578 bp Feature: domain Description: COG1373 Location: 29505-30567 bp Feature: domain Description: COG1373 Location: 295 05 -305 67 bp Feature: gene Location: 30885-31040 bp Feature: gene Location: 31453-32856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795-32413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795 -32413 bp Feature: domain Description: GIIM Note: maturase Location: 32467-32677 bp Feature: domain Description: GIIM Note: maturase Location: 32467-32677 bp Feature: gene Location: 33173-34519 bp Feature: domain Description: GH43_Xsa43E-like Location: 33272-34064 bp Feature: domain Description: GH43_Xsa43E-like Location: 33272-34064 bp Feature: domain Description: CBM6_xylanase-like Location: 34127-34511 bp Feature: domain Description: CBM6_xylanase-like Location: 34127-345 11 bp Feature: gene Location: 34620-37004 bp Feature: domain Description: Glyco_hydro_127 Location: 34719-36252 bp Feature: domain Description: Glyco_hydro_127 Location: 34719-3625 2 bp Feature: domain Description: DUF4986 Location: 36267-36513 bp Feature: domain Description: DUF4986 Location: 36267-365 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)