myRT

myRT report for GCA_009495975.1_ASM949597v1

Download annotations/find similar RTs

Seq: WIBD01000010.1 Pseudomonas sp. SZ57 contig_10, whole genome shotgun sequence (230813 bp)
Overview 1 RT 1: 150964-154589 bp Neighborhood of RT #1 [150964, 154609] RVT-UG7 PRK00507 Feature: gene Location: 150964-152598 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 151390-151807 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 51 390-1 51 807 bp Feature: gene Location: 153646-153894 bp Feature: gene Location: 153929-154609 bp Feature: domain Description: PRK00507 Location: 153950-154589 bp Feature: domain Description: PRK00507 Location: 1 53950-1 54589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK00507 (deoxyribose-phosphate aldolase; Provisional)

Seq: WIBD01000021.1 Pseudomonas sp. SZ57 contig_21, whole genome shotgun sequence (167871 bp)
Overview 1 RT 1: 107570-112343 bp Neighborhood of RT #1 [107570, 113158] RVT-UG28 KOG0713 Feature: gene Location: 107570-108130 bp Feature: gene Location: 108315-108584 bp Feature: gene Location: 108838-110334 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 109123-109762 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 10912 3-109762 bp Feature: gene Location: 111453-111659 bp Feature: gene Location: 112133-113158 bp Feature: domain Description: KOG0713 Location: 112154-112343 bp Feature: domain Description: KOG0713 Location: 112 154-112 343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, KOG0713 (KOG0713, Molecular chaperone (DnaJ superfamily) )

Seq: WIBD01000035.1 Pseudomonas sp. SZ57 contig_35, whole genome shotgun sequence (111647 bp)
Overview 1 RT 1: 33282-39796 bp Neighborhood of RT #1 [33282, 39858] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons VbhA_like PAS PRK09776 PRK10060 Feature: gene Location: 33282-33860 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33285-33855 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 3 285-3 3 855 bp Feature: gene Location: 34026-34190 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 34029-34131 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 4029-3 413 1 bp Feature: gene Location: 34215-36053 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34353-35058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 43 53 -3 5058 bp Feature: gene Location: 36342-36632 bp Feature: domain Description: VbhA_like Location: 36435-36576 bp Feature: domain Description: VbhA_like Location: 3 643 5-3 6576 bp Feature: gene Location: 37372-39858 bp Feature: domain Description: PAS Location: 37465-37753 bp Feature: domain Description: PAS Location: 3 7465-3 7753 bp Feature: domain Description: PRK09776 Location: 37753-38056 bp Feature: domain Description: PRK09776 Location: 3 7753 -3 8056 bp Feature: domain Description: PRK10060 Location: 38137-39796 bp Feature: domain Description: PRK10060 Location: 3 813 7-3 9796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-Retrons, VbhA_like (cl17006), PAS (smart00091), PRK09776 (putative diguanylate cyclase; Provisional), PRK10060 (cyclic di-GMP phosphodiesterase)

Seq: WIBD01000007.1 Pseudomonas sp. SZ57 contig_7, whole genome shotgun sequence (345163 bp)
Overview 1 RT 1: 83025-94241 bp Neighborhood of RT #1 [83025, 94300] ABC_choline_bnd chol_sulf_TF RVT-GII PRK13557 InsE DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C nicotinamidase_related Feature: gene Location: 83025-83969 bp Feature: domain Description: ABC_choline_bnd Location: 83097-83955 bp Feature: domain Description: ABC_choline_bnd Location: 83097-83955 bp Feature: gene Location: 84178-85068 bp Feature: domain Description: chol_sulf_TF Location: 84181-85042 bp Feature: domain Description: chol_sulf_TF Location: 84 181-8504 2 bp Feature: gene Location: 85234-87000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85918-86608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85918-86608 bp Feature: gene Location: 87127-87270 bp Feature: gene Location: 87345-88883 bp Feature: domain Description: PRK13557 Location: 87612-88803 bp Feature: domain Description: PRK13557 Location: 87612-88803 bp Feature: gene Location: 90242-90673 bp Feature: domain Description: InsE Location: 90248-90389 bp Feature: domain Description: InsE Location: 9024 8-90389 bp Feature: gene Location: 90696-91157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 90702-90954 bp Feature: domain Description: DDE_Tnp_IS66 Location: 90702-90954 bp Feature: gene Location: 91530-93191 bp Feature: domain Description: RVT_N Location: 91575-91818 bp Feature: domain Description: RVT_N Location: 91575-91818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91863-92499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91863-924 99 bp Feature: domain Description: GIIM Note: maturase Location: 92553-92784 bp Feature: domain Description: GIIM Note: maturase Location: 92553-92784 bp Feature: gene Location: 93383-93517 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 93389-93500 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 93389-93500 bp Feature: gene Location: 93791-94300 bp Feature: domain Description: nicotinamidase_related Location: 93800-94241 bp Feature: domain Description: nicotinamidase_related Location: 93800-94 24 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_choline_bnd (TIGR03414), chol_sulf_TF (TIGR03418), RVT-GII, PRK13557 (histidine kinase; Provisional), InsE (COG2963), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), nicotinamidase_related (cd01014)