myRT

myRT report for GCA_009497205.1_ASM949720v1

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Seq: WIKH01000027.1 Escherichia coli strain V16 NODE_27_length_40940_cov_50.9699, whole genome shotgun sequence (40940 bp)
Overview 1 RT 1: 24465-28748 bp Neighborhood of RT #1 [24465, 28756] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 24465-25370 bp Feature: gene Location: 25628-25825 bp Feature: gene Location: 25856-26395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26186-26264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 86-26264 bp Feature: gene Location: 26423-26944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26429-26711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26429-2671 1 bp Feature: domain Description: GIIM Note: maturase Location: 26759-26939 bp Feature: domain Description: GIIM Note: maturase Location: 26759-26939 bp Feature: gene Location: 27266-27454 bp Feature: gene Location: 27494-28756 bp Feature: domain Description: YesM Location: 28004-28748 bp Feature: domain Description: YesM Location: 28004-28748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: WIKH01000463.1 Escherichia coli strain V16 NODE_463_length_503_cov_69.9601, whole genome shotgun sequence (503 bp)
Overview 1 RT 1: 1-400 bp Neighborhood of RT #1 [1, 399] RVT-GII Feature: gene Location: 1-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIKH01000063.1 Escherichia coli strain V16 NODE_63_length_17237_cov_48.478, whole genome shotgun sequence (17237 bp)
Overview 1 RT 1: 3-3021 bp Neighborhood of RT #1 [3, 3021] RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 3-1067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-627 bp Feature: domain Description: GIIM Note: maturase Location: 675-906 bp Feature: domain Description: GIIM Note: maturase Location: 675-906 bp Feature: gene Location: 1454-2845 bp Feature: domain Description: InsG Location: 1457-2378 bp Feature: domain Description: InsG Location: 1457-23 78 bp Feature: domain Description: Transposase_20 Location: 2501-2747 bp Feature: domain Description: Transposase_20 Location: 2501-2747 bp Feature: gene Location: 2854-3021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: WIKH01000086.1 Escherichia coli strain V16 NODE_86_length_12098_cov_54.0398, whole genome shotgun sequence (12098 bp)
Overview 1 RT 1: 8687-11717 bp Neighborhood of RT #1 [8687, 11767] RVT-GII COG3547 COG3547 Feature: gene Location: 8687-8887 bp Feature: gene Location: 8895-9035 bp Feature: gene Location: 9069-10526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9477-10164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 77-10164 bp Feature: gene Location: 10765-11160 bp Feature: domain Description: COG3547 Location: 10783-11074 bp Feature: domain Description: COG354 7 Location: 10783-11074 bp Feature: gene Location: 11219-11767 bp Feature: domain Description: COG3547 Location: 11231-11717 bp Feature: domain Description: COG354 7 Location: 11231-11717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: WIKH01000093.1 Escherichia coli strain V16 NODE_93_length_10702_cov_57.7054, whole genome shotgun sequence (10702 bp)
Overview 1 RT 1: 2979-10675 bp Neighborhood of RT #1 [2979, 10701] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix FHA_bHelix Feature: gene Location: 2979-3254 bp Feature: gene Location: 3450-3611 bp Feature: gene Location: 3693-4403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4395 bp Feature: gene Location: 4398-4817 bp Feature: gene Location: 4855-5244 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4960-5203 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4960-5 203 bp Feature: gene Location: 6663-7313 bp Feature: domain Description: HTH_23 Location: 6714-6813 bp Feature: domain Description: HTH_23 Location: 6714-6813 bp Feature: domain Description: InsE Location: 6939-7290 bp Feature: domain Description: InsE Location: 6939-7290 bp Feature: gene Location: 7685-7888 bp Feature: gene Location: 8295-8669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8301-8472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8301-8472 bp Feature: gene Location: 8685-9497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8958-9414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895 8-9414 bp Feature: gene Location: 9618-9821 bp Feature: gene Location: 10108-10701 bp Feature: domain Description: FHA_bHelix Location: 10123-10357 bp Feature: domain Description: FHA_bHelix Location: 10123-1035 7 bp Feature: domain Description: FHA_bHelix Location: 10564-10675 bp Feature: domain Description: FHA_bHelix Location: 105 64-10675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046)