myRT

myRT report for GCA_009497395.1_ASM949739v1

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Seq: WIKQ01000025.1 Escherichia coli strain C20 NODE_25_length_36362_cov_52.2116, whole genome shotgun sequence (36362 bp)
Overview 1 RT 1: 16869-20984 bp Neighborhood of RT #1 [16869, 20984] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 16869-17021 bp Feature: domain Description: rve_2 Location: 16899-17007 bp Feature: domain Description: rve_2 Location: 1 6899-1 7007 bp Feature: gene Location: 17294-17599 bp Feature: gene Location: 17642-19030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17972-18590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7972-1 8590 bp Feature: domain Description: GIIM Note: maturase Location: 18638-18869 bp Feature: domain Description: GIIM Note: maturase Location: 1 8638-1 8869 bp Feature: gene Location: 19417-20808 bp Feature: domain Description: InsG Location: 19420-20341 bp Feature: domain Description: InsG Location: 1 9420-20341 bp Feature: domain Description: Transposase_20 Location: 20464-20710 bp Feature: domain Description: Transposase_20 Location: 20464-2071 0 bp Feature: gene Location: 20817-20984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: WIKQ01000033.1 Escherichia coli strain C20 NODE_33_length_11261_cov_53.3374, whole genome shotgun sequence (11261 bp)
Overview 1 RT 1: 6206-9236 bp Neighborhood of RT #1 [6206, 9286] RVT-GII COG3547 COG3547 Feature: gene Location: 6206-6406 bp Feature: gene Location: 6414-6554 bp Feature: gene Location: 6588-8045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6996-7683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6996-7683 bp Feature: gene Location: 8284-8679 bp Feature: domain Description: COG3547 Location: 8302-8593 bp Feature: domain Description: COG3547 Location: 8302 -8593 bp Feature: gene Location: 8738-9286 bp Feature: domain Description: COG3547 Location: 8750-9236 bp Feature: domain Description: COG3547 Location: 8750-92 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: WIKQ01000034.1 Escherichia coli strain C20 NODE_34_length_10702_cov_58.6006, whole genome shotgun sequence (10702 bp)
Overview 1 RT 1: 2979-10675 bp Neighborhood of RT #1 [2979, 10701] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix FHA_bHelix Feature: gene Location: 2979-3254 bp Feature: gene Location: 3450-3611 bp Feature: gene Location: 3693-4403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 894-43 95 bp Feature: gene Location: 4398-4817 bp Feature: gene Location: 4855-5244 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4960-5203 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4960-5203 bp Feature: gene Location: 6663-7313 bp Feature: domain Description: HTH_23 Location: 6714-6813 bp Feature: domain Description: HTH_23 Location: 6714-6813 bp Feature: domain Description: InsE Location: 6939-7290 bp Feature: domain Description: InsE Location: 693 9-7290 bp Feature: gene Location: 7685-7888 bp Feature: gene Location: 8295-8669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8301-8472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 01-8472 bp Feature: gene Location: 8685-9497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8958-9414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8958-9414 bp Feature: gene Location: 9618-9821 bp Feature: gene Location: 10108-10701 bp Feature: domain Description: FHA_bHelix Location: 10123-10357 bp Feature: domain Description: FHA_bHelix Location: 10123 -103 57 bp Feature: domain Description: FHA_bHelix Location: 10564-10675 bp Feature: domain Description: FHA_bHelix Location: 10564-10675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046)

Seq: WIKQ01000004.1 Escherichia coli strain C20 NODE_4_length_385251_cov_42.3203, whole genome shotgun sequence (385251 bp)
Overview 1 RT 1: 346812-355968 bp Neighborhood of RT #1 [346812, 356000] AAA_15 AAA_15 RVT-Retrons Inovirus_Gp2 Feature: gene Location: 346812-347045 bp Feature: gene Location: 347191-349308 bp Feature: domain Description: AAA_15 Location: 347194-347611 bp Feature: domain Description: AAA_15 Location: 34 7194 -34 7611 bp Feature: domain Description: AAA_15 Location: 347749-348175 bp Feature: domain Description: AAA_15 Location: 34 774 9-34 8175 bp Feature: gene Location: 349481-350581 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 349625-350186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 9625-350186 bp Feature: gene Location: 351052-354891 bp Feature: gene Location: 355302-356000 bp Feature: domain Description: Inovirus_Gp2 Location: 355413-355968 bp Feature: domain Description: Inovirus_Gp2 Location: 3554 13-355968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Inovirus_Gp2 (pfam11726)