myRT

myRT report for GCA_009599605.1_ASM959960v1

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Seq: WIRK01000113.1 Sinorhizobium meliloti strain HM007-12 contig_113, whole genome shotgun sequence (45933 bp)
Overview 1 RT 1: 3-3268 bp Neighborhood of RT #1 [3, 3318] RVT-GII GIIM PBP1_uncharacterized_sugar_binding PBP1_ABC_sugar_binding_like_4 Feature: gene Location: 3-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-720 bp Feature: domain Description: GIIM Note: maturase Location: 801-1023 bp Feature: domain Description: GIIM Note: maturase Location: 801 -1 023 bp Feature: gene Location: 1163-1882 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 1202-1871 bp Feature: domain Description: PBP1 _uncharacterized_sugar_binding Location: 1 202-1 871 bp Feature: gene Location: 2284-3318 bp Feature: domain Description: PBP1_ABC_sugar_binding_like_4 Location: 2434-3268 bp Feature: domain Description: PBP1 _ABC_sugar_binding_like_4 Location: 2434-3268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_uncharacterized_sugar_binding, PBP1_ABC_sugar_binding_like_4, RVT-GII, GIIM (pfam08388)

Seq: WIRK01000114.1 Sinorhizobium meliloti strain HM007-12 contig_114, whole genome shotgun sequence (1786 bp)
Overview 1 RT 1: 2-1781 bp Neighborhood of RT #1 [2, 1783] RVT-GII COG3415 Feature: gene Location: 2-922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 18-872 bp Feature: gene Location: 1517-1783 bp Feature: domain Description: COG3415 Location: 1520-1781 bp Feature: domain Description: COG3415 Location: 152 0-1781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII

Seq: WIRK01000150.1 Sinorhizobium meliloti strain HM007-12 contig_150, whole genome shotgun sequence (85339 bp)
Overview 1 RT 1: 83164-85288 bp Neighborhood of RT #1 [83164, 85338] HTH_LacI RVT-GII Feature: gene Location: 83164-83568 bp Feature: gene Location: 83574-83906 bp Feature: domain Description: HTH_LacI Location: 83595-83718 bp Feature: domain Description: HTH_LacI Location: 83 595-83 718 bp Feature: gene Location: 84469-85338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84634-85288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8463 4-85288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LacI (cd01392), RVT-GII

Seq: WIRK01000017.1 Sinorhizobium meliloti strain HM007-12 contig_17, whole genome shotgun sequence (65573 bp)
Overview 1 RT 1: 133-2811 bp Neighborhood of RT #1 [133, 2831] RVT-GII GIIM RVT-GII DUF982 Feature: gene Location: 133-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139-4 72 bp Feature: domain Description: GIIM Note: maturase Location: 526-634 bp Feature: domain Description: GIIM Note: maturase Location: 526-634 bp Feature: gene Location: 867-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194-1416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1194 -14 16 bp Feature: gene Location: 2225-2527 bp Feature: gene Location: 2571-2831 bp Feature: domain Description: DUF982 Location: 2604-2811 bp Feature: domain Description: DUF982 Location: 2604 -2811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF982 (pfam06169)

Seq: WIRK01000018.1 Sinorhizobium meliloti strain HM007-12 contig_18, whole genome shotgun sequence (68046 bp)
Overview 1 RT 1: 16-2962 bp Neighborhood of RT #1 [16, 2976] RVT-GII RVT-GII GIIM DUF3018 fabG Feature: gene Location: 16-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-5 65 bp Feature: gene Location: 618-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624-95 7 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1119 bp Feature: gene Location: 1871-2011 bp Feature: domain Description: DUF3018 Location: 1877-2000 bp Feature: domain Description: DUF3018 Location: 1877-2000 bp Feature: gene Location: 2194-2976 bp Feature: domain Description: fabG Location: 2212-2962 bp Feature: domain Description: fabG Location: 2212-2962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF3018 (pfam11455), GIIM (pfam08388), fabG (PRK12825)

Seq: WIRK01000019.1 Sinorhizobium meliloti strain HM007-12 contig_19, whole genome shotgun sequence (28643 bp)
Overview 1 RT 1: 16-4343 bp Neighborhood of RT #1 [16, 4354] RVT-GII RVT-GII GIIM PRK09356 hutH Feature: gene Location: 16-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-56 5 bp Feature: gene Location: 618-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 24-957 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1119 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1119 bp Feature: gene Location: 1452-2822 bp Feature: domain Description: PRK09356 Location: 1611-2814 bp Feature: domain Description: PRK09356 Location: 16 11-2814 bp Feature: gene Location: 2819-4354 bp Feature: domain Description: hutH Location: 2828-4343 bp Feature: domain Description: hutH Location: 2828-4343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388), hutH (TIGR01225)

Seq: WIRK01000034.1 Sinorhizobium meliloti strain HM007-12 contig_34, whole genome shotgun sequence (6981 bp)
Overview 1 RT 1: 2209-5378 bp Neighborhood of RT #1 [2209, 5428] RVT-GII Transposase_mut Feature: gene Location: 2209-2397 bp Feature: gene Location: 2549-2794 bp Feature: gene Location: 3009-4418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-4050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-4050 bp Feature: gene Location: 4670-4909 bp Feature: gene Location: 4967-5428 bp Feature: domain Description: Transposase_mut Location: 4976-5378 bp Feature: domain Description: Transposase_mut Location: 497 6-537 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_mut (pfam00872)

Seq: WIRK01000041.1 Sinorhizobium meliloti strain HM007-12 contig_41, whole genome shotgun sequence (6571 bp)
Overview 1 RT 1: 4136-6387 bp Neighborhood of RT #1 [4136, 6569] TlpA_like_family RVT-GII Feature: gene Location: 4136-5269 bp Feature: domain Description: TlpA_like_family Location: 4214-4535 bp Feature: domain Description: TlpA_like_family Location: 4214-4535 bp Feature: gene Location: 5266-5451 bp Feature: gene Location: 5670-6569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5733-6387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5733-638 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlpA_like_family (cd02966), RVT-GII

Seq: WIRK01000062.1 Sinorhizobium meliloti strain HM007-12 contig_62, whole genome shotgun sequence (1367 bp)
Overview 1 RT 1: 1-1316 bp Neighborhood of RT #1 [1, 1366] COG3415 RVT-GII Feature: gene Location: 1-189 bp Feature: domain Description: COG3415 Location: 4-190 bp Feature: domain Description: COG3415 Location: 4-19 0 bp Feature: gene Location: 458-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII

Seq: WIRK01000067.1 Sinorhizobium meliloti strain HM007-12 contig_67, whole genome shotgun sequence (146214 bp)
Overview 1 RT 1: 142948-145873 bp Neighborhood of RT #1 [142948, 146082] HTH_ARSR AraJ RVT-GII RVT-GII GIIM Feature: gene Location: 142948-143319 bp Feature: domain Description: HTH_ARSR Location: 143005-143203 bp Feature: domain Description: HTH_ARSR Location: 143005-143203 bp Feature: gene Location: 143409-144593 bp Feature: domain Description: AraJ Location: 143412-144570 bp Feature: domain Description: AraJ Location: 143412-144570 bp Feature: gene Location: 144770-145348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145097-145319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145097-145319 bp Feature: gene Location: 145372-146082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145378-145711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145378-145711 bp Feature: domain Description: GIIM Note: maturase Location: 145765-145873 bp Feature: domain Description: GIIM Note: maturase Location: 145765-145873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII, GIIM (pfam08388)