myRT

myRT report for GCA_009599615.1_ASM959961v1

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Seq: WIRN01000120.1 Sinorhizobium meliloti strain HM015-1 contig_120, whole genome shotgun sequence (16877 bp)
Overview 1 RT 1: 13606-16640 bp Neighborhood of RT #1 [13606, 16789] HTH_ARSR AraJ RVT-GII GIIM Feature: gene Location: 13606-13977 bp Feature: domain Description: HTH_ARSR Location: 13663-13861 bp Feature: domain Description: HTH_ARSR Location: 1 3663-1 3861 bp Feature: gene Location: 14067-15251 bp Feature: domain Description: AraJ Location: 14070-15228 bp Feature: domain Description: AraJ Location: 1 4070-1 5228 bp Feature: gene Location: 15428-16789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15755-16370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5755-1 6370 bp Feature: domain Description: GIIM Note: maturase Location: 16424-16640 bp Feature: domain Description: GIIM Note: maturase Location: 1 6424-1 6640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII, GIIM (pfam08388)

Seq: WIRN01000123.1 Sinorhizobium meliloti strain HM015-1 contig_123, whole genome shotgun sequence (28179 bp)
Overview 1 RT 1: 25659-27942 bp Neighborhood of RT #1 [25659, 28091] RVT-GII GIIM Feature: gene Location: 25659-25961 bp Feature: gene Location: 26278-26529 bp Feature: gene Location: 26910-28091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27054-27672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7054-2 7672 bp Feature: domain Description: GIIM Note: maturase Location: 27726-27942 bp Feature: domain Description: GIIM Note: maturase Location: 2 772 6-2 7942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIRN01000202.1 Sinorhizobium meliloti strain HM015-1 contig_202, whole genome shotgun sequence (14477 bp)
Overview 1 RT 1: 11160-13427 bp Neighborhood of RT #1 [11160, 13427] RVT-GII GIIM Feature: gene Location: 11160-11291 bp Feature: gene Location: 11228-11446 bp Feature: gene Location: 11507-12766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11723-12374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11723 -123 74 bp Feature: domain Description: GIIM Note: maturase Location: 12458-12680 bp Feature: domain Description: GIIM Note: maturase Location: 12458-12680 bp Feature: gene Location: 12936-13112 bp Feature: gene Location: 13140-13427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIRN01000024.1 Sinorhizobium meliloti strain HM015-1 contig_24, whole genome shotgun sequence (44083 bp)
Overview 1 RT 1: 1-3808 bp Neighborhood of RT #1 [1, 3819] RVT-GII GIIM PRK09356 hutH Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 18 bp Feature: domain Description: GIIM Note: maturase Location: 472-688 bp Feature: domain Description: GIIM Note: maturase Location: 4 72-688 bp Feature: gene Location: 917-2287 bp Feature: domain Description: PRK09356 Location: 1076-2279 bp Feature: domain Description: PRK09356 Location: 1076-2279 bp Feature: gene Location: 2284-3819 bp Feature: domain Description: hutH Location: 2293-3808 bp Feature: domain Description: hutH Location: 2293-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated)

Seq: WIRN01000025.1 Sinorhizobium meliloti strain HM015-1 contig_25, whole genome shotgun sequence (91325 bp)
Overview 1 RT 1: 1-1469 bp Neighborhood of RT #1 [1, 1477] RVT-GII GIIM MazF DUF3018 Feature: gene Location: 1-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-418 bp Feature: domain Description: GIIM Note: maturase Location: 472-688 bp Feature: domain Description: GIIM Note: maturase Location: 472-688 bp Feature: gene Location: 1137-1340 bp Feature: domain Description: MazF Location: 1140-1251 bp Feature: domain Description: MazF Location: 1140-125 1 bp Feature: gene Location: 1337-1477 bp Feature: domain Description: DUF3018 Location: 1340-1469 bp Feature: domain Description: DUF3018 Location: 1340-1469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazF (COG2337), DUF3018 (pfam11455), RVT-GII, GIIM (pfam08388)

Seq: WIRN01000097.1 Sinorhizobium meliloti strain HM015-1 contig_97, whole genome shotgun sequence (2563 bp)
Overview 1 RT 1: 1-2562 bp Neighborhood of RT #1 [1, 2561] COG3415 RVT-GII GIIM DDE_3 Feature: gene Location: 1-252 bp Feature: domain Description: COG3415 Location: 7-250 bp Feature: domain Description: COG3415 Location: 7-250 bp Feature: gene Location: 847-2106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106 3-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1798-2020 bp Feature: domain Description: GIIM Note: maturase Location: 1798-2020 bp Feature: gene Location: 2202-2561 bp Feature: domain Description: DDE_3 Location: 2217-2562 bp Feature: domain Description: DDE_3 Location: 2217-256 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)