myRT

myRT report for GCA_009599645.1_ASM959964v1

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Seq: WIRM01000108.1 Sinorhizobium meliloti strain HM013-1 contig_108, whole genome shotgun sequence (16870 bp)
Overview 1 RT 1: 13600-16633 bp Neighborhood of RT #1 [13600, 16782] HTH_ARSR AraJ RVT-GII GIIM Feature: gene Location: 13600-13971 bp Feature: domain Description: HTH_ARSR Location: 13657-13855 bp Feature: domain Description: HTH_ARSR Location: 1 3657-1 3855 bp Feature: gene Location: 14061-15245 bp Feature: domain Description: AraJ Location: 14064-15222 bp Feature: domain Description: AraJ Location: 1 4064-1 5222 bp Feature: gene Location: 15601-16782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15745-16363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5745-1 6363 bp Feature: domain Description: GIIM Note: maturase Location: 16417-16633 bp Feature: domain Description: GIIM Note: maturase Location: 1 641 7-1 6633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII, GIIM (pfam08388)

Seq: WIRM01000134.1 Sinorhizobium meliloti strain HM013-1 contig_134, whole genome shotgun sequence (33888 bp)
Overview 1 RT 1: 25363-31810 bp Neighborhood of RT #1 [25363, 31848] COG3177 RhtB RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 25363-26547 bp Feature: domain Description: COG3177 Location: 25441-26485 bp Feature: domain Description: COG3177 Location: 2 5441-2 6485 bp Feature: gene Location: 27093-27725 bp Feature: domain Description: RhtB Location: 27105-27720 bp Feature: domain Description: RhtB Location: 2 7105-2 772 0 bp Feature: gene Location: 27923-29746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28661-29351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8661-2 9351 bp Feature: gene Location: 29848-31440 bp Feature: domain Description: LZ_Tnp_IS66 Location: 29965-30196 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 9965-30196 bp Feature: domain Description: zf-IS66 Location: 30223-30349 bp Feature: domain Description: zf-IS66 Location: 302 2 3-30349 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30412-31279 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30412 -312 79 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31300-31411 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31300-31411 bp Feature: gene Location: 31495-31848 bp Feature: domain Description: TnpB_IS66 Location: 31522-31810 bp Feature: domain Description: TnpB_IS66 Location: 3152 2 -31810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RhtB (COG1280), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: WIRM01000014.1 Sinorhizobium meliloti strain HM013-1 contig_14, whole genome shotgun sequence (93008 bp)
Overview 1 RT 1: 1-4195 bp Neighborhood of RT #1 [1, 4206] RVT-GII GIIM PRK09356 hutH Feature: gene Location: 1-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-805 bp Feature: domain Description: GIIM Note: maturase Location: 859-1075 bp Feature: domain Description: GIIM Note: maturase Location: 859-1075 bp Feature: gene Location: 1304-2674 bp Feature: domain Description: PRK09356 Location: 1463-2666 bp Feature: domain Description: PRK093 56 Location: 1463 -2666 bp Feature: gene Location: 2671-4206 bp Feature: domain Description: hutH Location: 2680-4195 bp Feature: domain Description: hutH Location: 2680-4195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: WIRM01000015.1 Sinorhizobium meliloti strain HM013-1 contig_15, whole genome shotgun sequence (29362 bp)
Overview 1 RT 1: 1-1856 bp Neighborhood of RT #1 [1, 1864] RVT-GII GIIM MazF DUF3018 Feature: gene Location: 1-1224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-805 bp Feature: domain Description: GIIM Note: maturase Location: 859-1075 bp Feature: domain Description: GIIM Note: maturase Location: 859-1075 bp Feature: gene Location: 1524-1727 bp Feature: domain Description: MazF Location: 1527-1638 bp Feature: domain Description: MazF Location: 1527-1638 bp Feature: gene Location: 1724-1864 bp Feature: domain Description: DUF3018 Location: 1727-1856 bp Feature: domain Description: DUF3018 Location: 1727-1856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), DUF3018 (pfam11455)

Seq: WIRM01000022.1 Sinorhizobium meliloti strain HM013-1 contig_22, whole genome shotgun sequence (28343 bp)
Overview 1 RT 1: 25816-28106 bp Neighborhood of RT #1 [25816, 28255] RVT-GII GIIM Feature: gene Location: 25816-26118 bp Feature: gene Location: 26454-26693 bp Feature: gene Location: 27074-28255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27218-27836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27218-27836 bp Feature: domain Description: GIIM Note: maturase Location: 27890-28106 bp Feature: domain Description: GIIM Note: maturase Location: 27890-28106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIRM01000072.1 Sinorhizobium meliloti strain HM013-1 contig_72, whole genome shotgun sequence (2832 bp)
Overview 1 RT 1: 96-2825 bp Neighborhood of RT #1 [96, 2830] COG3415 RVT-GII GIIM DDE_3 Feature: gene Location: 96-503 bp Feature: domain Description: COG3415 Location: 99-501 bp Feature: domain Description: COG3415 Location: 99-501 bp Feature: gene Location: 1098-2357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1314-1968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1314-196 8 bp Feature: domain Description: GIIM Note: maturase Location: 2049-2271 bp Feature: domain Description: GIIM Note: maturase Location: 2049-2271 bp Feature: gene Location: 2453-2830 bp Feature: domain Description: DDE_3 Location: 2468-2825 bp Feature: domain Description: DDE_3 Location: 246 8-2825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), COG3415 (Transposase )