myRT

myRT report for GCA_009599705.1_ASM959970v1

Download annotations/find similar RTs

Seq: WISQ01000105.1 Sinorhizobium medicae strain M58 contig_105, whole genome shotgun sequence (13621 bp)
Overview 1 RT 1: 49-3655 bp Neighborhood of RT #1 [49, 3684] Tra8 RVT-GII KOG2250 PRK02853 Feature: gene Location: 49-1050 bp Feature: domain Description: Tra8 Location: 55-1045 bp Feature: domain Description: Tra8 Location: 55-1 045 bp Feature: gene Location: 1158-1481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 -1 434 bp Feature: gene Location: 1623-3035 bp Feature: domain Description: KOG2250 Location: 1707-3021 bp Feature: domain Description: KOG2250 Location: 1 707-3021 bp Feature: gene Location: 3187-3684 bp Feature: domain Description: PRK02853 Location: 3205-3655 bp Feature: domain Description: PRK02853 Location: 3205-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, KOG2250 (KOG2250, Glutamate/leucine/phenylalanine/valine dehydrogenases ), PRK02853 (hypothetical protein; Provisional)

Seq: WISQ01000154.1 Sinorhizobium medicae strain M58 contig_154, whole genome shotgun sequence (14988 bp)
Overview 1 RT 1: 85-3530 bp Neighborhood of RT #1 [85, 3530] InsE PHA02517 RVT-GII RVT-GII DDE_Tnp_IS66_C Feature: gene Location: 85-396 bp Feature: domain Description: InsE Location: 88-361 bp Feature: domain Description: InsE Location: 88-361 bp Feature: gene Location: 393-1223 bp Feature: domain Description: PHA02517 Location: 504-1197 bp Feature: domain Description: PHA02 517 Location: 504-1197 bp Feature: gene Location: 1242-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 45-1617 bp Feature: gene Location: 1820-2851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2558-2675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 558-2 675 bp Feature: gene Location: 2970-3185 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3045-3156 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3045-3156 bp Feature: gene Location: 3357-3530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, DDE_Tnp_IS66_C (pfam13817)

Seq: WISQ01000035.1 Sinorhizobium medicae strain M58 contig_35, whole genome shotgun sequence (61107 bp)
Overview 1 RT 1: 54513-60247 bp Neighborhood of RT #1 [54513, 60336] UvrD UvrD UvrD RVT-Retrons Transposase_mut Feature: gene Location: 54513-54671 bp Feature: gene Location: 54668-56590 bp Feature: domain Description: UvrD Location: 54752-55019 bp Feature: domain Description: UvrD Location: 54752-55019 bp Feature: domain Description: UvrD Location: 55064-55607 bp Feature: domain Description: UvrD Location: 55064-55607 bp Feature: domain Description: UvrD Location: 56225-56450 bp Feature: domain Description: UvrD Location: 56225-56450 bp Feature: gene Location: 57125-58858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57260-57887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57260-57887 bp Feature: gene Location: 59388-59978 bp Feature: gene Location: 59995-60336 bp Feature: domain Description: Transposase_mut Location: 60112-60247 bp Feature: domain Description: Transposase_mut Location: 60112-60247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Transposase_mut (pfam00872)