myRT

myRT report for GCA_009599825.1_ASM959982v1

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Seq: WIRV01000123.1 Sinorhizobium medicae strain KH36d contig_123, whole genome shotgun sequence (22186 bp)
Overview 1 RT 1: 17614-22154 bp Neighborhood of RT #1 [17614, 22183] ParD_like COG4185 RVT-GII IS285 Feature: gene Location: 17614-18210 bp Feature: domain Description: ParD_like Location: 17863-18037 bp Feature: domain Description: ParD_like Location: 1 7863-1 8037 bp Feature: gene Location: 18207-18797 bp Feature: domain Description: COG4185 Location: 18216-18759 bp Feature: domain Description: COG41 85 Location: 1 821 6-1 8759 bp Feature: gene Location: 19178-21001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19916-20606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 991 6-20606 bp Feature: gene Location: 21158-21367 bp Feature: gene Location: 21443-22183 bp Feature: domain Description: IS285 Location: 21449-22154 bp Feature: domain Description: IS285 Location: 21 449-221 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParD_like (pfam11903), COG4185 (Predicted ABC-type ATPase ), RVT-GII, IS285 (COG3328)

Seq: WIRV01000163.1 Sinorhizobium medicae strain KH36d contig_163, whole genome shotgun sequence (4181 bp)
Overview 1 RT 1: 3-3196 bp Neighborhood of RT #1 [3, 3231] DDE_Tnp_IS66 RVT-GII GIIM COG3436 Feature: gene Location: 3-644 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36-645 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36-645 bp Feature: gene Location: 698-1957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1568 bp Feature: domain Description: GIIM Note: maturase Location: 1649-1865 bp Feature: domain Description: GIIM Note: maturase Location: 1649-1865 bp Feature: gene Location: 1502-2410 bp Feature: gene Location: 2470-3231 bp Feature: domain Description: COG3436 Location: 2719-3196 bp Feature: domain Description: COG3436 Location: 2 719-3196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)