myRT

myRT report for GCA_009599935.1_ASM959993v1

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Seq: WIRH01000124.1 Sinorhizobium medicae strain A321 contig_124, whole genome shotgun sequence (9112 bp)
Overview 1 RT 1: 605-1929 bp Neighborhood of RT #1 [605, 1929] RVT-GII Feature: gene Location: 605-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 -857 bp Feature: gene Location: 896-1081 bp Feature: gene Location: 1135-1929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIRH01000130.1 Sinorhizobium medicae strain A321 contig_130, whole genome shotgun sequence (14215 bp)
Overview 1 RT 1: 8186-12416 bp Neighborhood of RT #1 [8186, 12427] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc ArdC Feature: gene Location: 8186-9178 bp Feature: domain Description: Phage_int_SAM_1 Location: 8228-8471 bp Feature: domain Description: Phage_int_SAM_1 Location: 82 2 8-8471 bp Feature: domain Description: INT_RitC_C_like Location: 8564-9104 bp Feature: domain Description: INT_RitC_C_like Location: 8564-9104 bp Feature: gene Location: 9294-9449 bp Feature: gene Location: 9521-11179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9530-10367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9530-10367 bp Feature: domain Description: Intron_maturas2 Location: 10448-10736 bp Feature: domain Description: Intron_maturas2 Location: 10448-10736 bp Feature: domain Description: HNHc Note: nucleases Location: 10901-11060 bp Feature: domain Description: HNHc Note: nucleases Location: 10901-11060 bp Feature: gene Location: 11670-12020 bp Feature: gene Location: 12041-12427 bp Feature: domain Description: ArdC Location: 12068-12416 bp Feature: domain Description: ArdC Location: 12 068-12 416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WIRH01000192.1 Sinorhizobium medicae strain A321 contig_192, whole genome shotgun sequence (25408 bp)
Overview 1 RT 1: 775-2539 bp 2 RT 2: 21242-25330 bp Neighborhood of RT #1 [775, 2539] RVT-GII group_II_RT_mat Neighborhood of RT #2 [21242, 25407] TIGR02935 HTH_32 DDE_3 RVT-GII Feature: gene Location: 775-1011 bp Feature: gene Location: 1303-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1327-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 27-1654 bp Feature: gene Location: 1692-2015 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1713-1995 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1713 -1995 bp Feature: gene Location: 2294-2539 bp Feature: gene Location: 21242-21697 bp Feature: domain Description: TIGR02935 Location: 21245-21650 bp Feature: domain Description: TIGR0293 5 Location: 21245-21650 bp Feature: gene Location: 23183-24088 bp Feature: domain Description: HTH_32 Location: 23366-23579 bp Feature: domain Description: HTH_3 2 Location: 23 3 66-23 579 bp Feature: domain Description: DDE_3 Location: 23702-23930 bp Feature: domain Description: DDE_3 Location: 23 702-23 93 0 bp Feature: gene Location: 24910-25407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24913-25330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24913 -253 3 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), TIGR02935 (probable nitrogen fixation protein), HTH_32 (pfam13565), DDE_3 (pfam13358)

Seq: WIRH01000211.1 Sinorhizobium medicae strain A321 contig_211, whole genome shotgun sequence (3813 bp)
Overview 1 RT 1: 2-1941 bp Neighborhood of RT #1 [2, 1941] RVT-GII NPP1 Feature: gene Location: 2-499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-4 22 bp Feature: gene Location: 735-1403 bp Feature: domain Description: NPP1 Location: 813-1374 bp Feature: domain Description: NPP1 Location: 813-1374 bp Feature: gene Location: 1393-1941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NPP1 (pfam05630)

Seq: WIRH01000212.1 Sinorhizobium medicae strain A321 contig_212, whole genome shotgun sequence (3333 bp)
Overview 1 RT 1: 25-1658 bp Neighborhood of RT #1 [25, 1658] RVT-GII Feature: gene Location: 25-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-487 bp Feature: gene Location: 680-976 bp Feature: gene Location: 1419-1658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIRH01000213.1 Sinorhizobium medicae strain A321 contig_213, whole genome shotgun sequence (1411 bp)
Overview 1 RT 1: 25-1083 bp Neighborhood of RT #1 [25, 1083] RVT-GII RVT-GII Feature: gene Location: 25-549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34-472 bp Feature: gene Location: 546-695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 549-6 81 bp Feature: gene Location: 701-886 bp Feature: gene Location: 883-1083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIRH01000033.1 Sinorhizobium medicae strain A321 contig_33, whole genome shotgun sequence (37769 bp)
Overview 1 RT 1: 32242-37713 bp Neighborhood of RT #1 [32242, 37766] PyocinActivator COG3183 RVT-Retrons Trypsin_2 Tra5 HTH_Tnp_1 Feature: gene Location: 32242-32535 bp Feature: domain Description: PyocinActivator Location: 32284-32506 bp Feature: domain Description: PyocinActivator Location: 32284-32506 bp Feature: gene Location: 32696-33778 bp Feature: domain Description: COG3183 Location: 33455-33752 bp Feature: domain Description: COG3183 Location: 33455-337 52 bp Feature: gene Location: 34901-36079 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34907-35180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34907 -35180 bp Feature: domain Description: Trypsin_2 Location: 35564-35999 bp Feature: domain Description: Trypsin_2 Location: 35564-35999 bp Feature: gene Location: 36586-37569 bp Feature: domain Description: Tra5 Location: 36790-37540 bp Feature: domain Description: Tra5 Location: 367 90-37 540 bp Feature: gene Location: 37422-37766 bp Feature: domain Description: HTH_Tnp_1 Location: 37512-37713 bp Feature: domain Description: HTH_Tnp_1 Location: 37 512-37 7 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyocinActivator (pfam11112), COG3183 (Predicted restriction endonuclease, HNH family ), RVT-Retrons, Trypsin_2 (pfam13365), Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: WIRH01000089.1 Sinorhizobium medicae strain A321 contig_89, whole genome shotgun sequence (12738 bp)
Overview 1 RT 1: 1-8107 bp Neighborhood of RT #1 [1, 8145] A_NRPS_VisG_like PKS_PP PksD KOG1202 RVT-GII InsE TnpB_IS66 Feature: gene Location: 1-4809 bp Feature: domain Description: A_NRPS_VisG_like Location: 64-1537 bp Feature: domain Description: A_NRPS_VisG_like Location: 64-1537 bp Feature: domain Description: PKS_PP Location: 1561-1741 bp Feature: domain Description: PKS_PP Location: 1561-1741 bp Feature: domain Description: PksD Location: 1846-4555 bp Feature: domain Description: PksD Location: 18 46-4555 bp Feature: domain Description: KOG1202 Location: 4603-4774 bp Feature: domain Description: KOG1202 Location: 4603-4774 bp Feature: gene Location: 5193-5387 bp Feature: gene Location: 5418-7241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6156-6846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6156-68 46 bp Feature: gene Location: 7354-7731 bp Feature: domain Description: InsE Location: 7399-7561 bp Feature: domain Description: InsE Location: 7399-7561 bp Feature: gene Location: 7792-8145 bp Feature: domain Description: TnpB_IS66 Location: 7819-8107 bp Feature: domain Description: TnpB_IS66 Location: 78 19-8 107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT A_NRPS_VisG_like (cd17651), PKS_PP (smart00823), PksD (COG3321), KOG1202 (KOG1202, Animal-type fatty acid synthase and related proteins ), RVT-GII, InsE (COG2963), TnpB_IS66 (pfam05717)