myRT

myRT report for GCA_009599945.1_ASM959994v1

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Seq: WIRY01000184.1 Sinorhizobium meliloti strain KH48e contig_184, whole genome shotgun sequence (59560 bp)
Overview 1 RT 1: 22154-25905 bp Neighborhood of RT #1 [22154, 25905] HTH_XRE RVT-UG12 Feature: gene Location: 22154-22369 bp Feature: gene Location: 22832-23086 bp Feature: domain Description: HTH_XRE Location: 22871-23012 bp Feature: domain Description: HTH_XRE Location: 22871 -2301 2 bp Feature: gene Location: 23388-24992 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 23685-24129 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 23685-241 29 bp Feature: gene Location: 25049-25282 bp Feature: gene Location: 25480-25905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG12

Seq: WIRY01000204.1 Sinorhizobium meliloti strain KH48e contig_204, whole genome shotgun sequence (74937 bp)
Overview 1 RT 1: 60636-65868 bp Neighborhood of RT #1 [60636, 65873] PBP1_sensor_kinase_like COG3415 RVT-GII GIIM COG3335 YgbK Feature: gene Location: 60636-61538 bp Feature: domain Description: PBP1_sensor_kinase_like Location: 60678-61494 bp Feature: domain Description: PBP1_sensor_kinase_like Location: 60678-61494 bp Feature: gene Location: 61640-62047 bp Feature: domain Description: COG3415 Location: 61643-62045 bp Feature: domain Description: COG3415 Location: 61643-62 045 bp Feature: gene Location: 62693-63901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62858-63512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 858-63512 bp Feature: domain Description: GIIM Note: maturase Location: 63593-63815 bp Feature: domain Description: GIIM Note: maturase Location: 63593-63815 bp Feature: gene Location: 63997-64470 bp Feature: domain Description: COG3335 Location: 64075-64459 bp Feature: domain Description: COG3335 Location: 64075-64459 bp Feature: gene Location: 64596-65873 bp Feature: domain Description: YgbK Location: 64608-65868 bp Feature: domain Description: YgbK Location: 64608-65868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_sensor_kinase_like, COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), COG3335 (Transposase ), YgbK (COG3395)

Seq: WIRY01000028.1 Sinorhizobium meliloti strain KH48e contig_28, whole genome shotgun sequence (15912 bp)
Overview 1 RT 1: 13662-15910 bp Neighborhood of RT #1 [13662, 15909] HTH_ARSR AraJ RVT-GII Feature: gene Location: 13662-14033 bp Feature: domain Description: HTH_ARSR Location: 13719-13917 bp Feature: domain Description: HTH_ARSR Location: 13 719-13 917 bp Feature: gene Location: 14123-15307 bp Feature: domain Description: AraJ Location: 14126-15284 bp Feature: domain Description: AraJ Location: 14126-15284 bp Feature: gene Location: 15484-15909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15811-15910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15811-15910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII

Seq: WIRY01000040.1 Sinorhizobium meliloti strain KH48e contig_40, whole genome shotgun sequence (1276 bp)
Overview 1 RT 1: 1-1039 bp Neighborhood of RT #1 [1, 1188] RVT-GII GIIM Feature: gene Location: 1-1188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 -769 bp Feature: domain Description: GIIM Note: maturase Location: 823-1039 bp Feature: domain Description: GIIM Note: maturase Location: 823-1039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIRY01000041.1 Sinorhizobium meliloti strain KH48e contig_41, whole genome shotgun sequence (1279 bp)
Overview 1 RT 1: 1-1042 bp Neighborhood of RT #1 [1, 1191] RVT-GII GIIM Feature: gene Location: 1-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 4-772 bp Feature: domain Description: GIIM Note: maturase Location: 826-1042 bp Feature: domain Description: GIIM Note: maturase Location: 826-1042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIRY01000042.1 Sinorhizobium meliloti strain KH48e contig_42, whole genome shotgun sequence (27320 bp)
Overview 1 RT 1: 1-1788 bp Neighborhood of RT #1 [1, 1808] RVT-GII DUF982 Feature: gene Location: 1-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-247 bp Feature: gene Location: 1202-1504 bp Feature: gene Location: 1548-1808 bp Feature: domain Description: DUF982 Location: 1581-1788 bp Feature: domain Description: DUF982 Location: 1581-1788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF982 (pfam06169)

Seq: WIRY01000047.1 Sinorhizobium meliloti strain KH48e contig_47, whole genome shotgun sequence (91340 bp)
Overview 1 RT 1: 1-1484 bp Neighborhood of RT #1 [1, 1492] RVT-GII GIIM MazF DUF3018 Feature: gene Location: 1-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -433 bp Feature: domain Description: GIIM Note: maturase Location: 487-703 bp Feature: domain Description: GIIM Note: maturase Location: 487 -7 03 bp Feature: gene Location: 1152-1355 bp Feature: domain Description: MazF Location: 1155-1266 bp Feature: domain Description: MazF Location: 1155-1266 bp Feature: gene Location: 1352-1492 bp Feature: domain Description: DUF3018 Location: 1355-1484 bp Feature: domain Description: DUF3018 Location: 1355-1484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), DUF3018 (pfam11455)

Seq: WIRY01000086.1 Sinorhizobium meliloti strain KH48e contig_86, whole genome shotgun sequence (92571 bp)
Overview 1 RT 1: 88738-92419 bp Neighborhood of RT #1 [88738, 92568] hutH PRK09356 RVT-GII GIIM Feature: gene Location: 88738-90273 bp Feature: domain Description: hutH Location: 88747-90262 bp Feature: domain Description: hutH Location: 8 8 747-90262 bp Feature: gene Location: 90270-91640 bp Feature: domain Description: PRK09356 Location: 90429-91632 bp Feature: domain Description: PRK09356 Location: 90429-91632 bp Feature: gene Location: 91720-92568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91726-92149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91726-92149 bp Feature: domain Description: GIIM Note: maturase Location: 92203-92419 bp Feature: domain Description: GIIM Note: maturase Location: 92203-92419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388)