myRT

myRT report for GCA_009600005.1_ASM960000v1

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Seq: WIRL01000105.1 Sinorhizobium meliloti strain HM007-17 contig_105, whole genome shotgun sequence (2255 bp)
Overview 1 RT 1: 3-1649 bp Neighborhood of RT #1 [3, 1735] DDE_3 RVT-GII GIIM Feature: gene Location: 3-380 bp Feature: domain Description: DDE_3 Location: 18-375 bp Feature: domain Description: DDE_3 Location: 1 8-375 bp Feature: gene Location: 476-1735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692-1346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692-1 346 bp Feature: domain Description: GIIM Note: maturase Location: 1427-1649 bp Feature: domain Description: GIIM Note: maturase Location: 1 427-1 649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: WIRL01000107.1 Sinorhizobium meliloti strain HM007-17 contig_107, whole genome shotgun sequence (34375 bp)
Overview 1 RT 1: 25363-31810 bp Neighborhood of RT #1 [25363, 31848] COG3177 RhtB RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 25363-26547 bp Feature: domain Description: COG3177 Location: 25441-26485 bp Feature: domain Description: COG3177 Location: 2 5441-2 6485 bp Feature: gene Location: 27093-27725 bp Feature: domain Description: RhtB Location: 27105-27720 bp Feature: domain Description: RhtB Location: 2 7105-2 772 0 bp Feature: gene Location: 27923-29746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28661-29351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8661-2 9351 bp Feature: gene Location: 29848-31440 bp Feature: domain Description: LZ_Tnp_IS66 Location: 29965-30196 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 9965-30196 bp Feature: domain Description: zf-IS66 Location: 30223-30349 bp Feature: domain Description: zf-IS66 Location: 302 2 3-30349 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30412-31279 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30412 -312 79 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31300-31411 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31300-31411 bp Feature: gene Location: 31495-31848 bp Feature: domain Description: TnpB_IS66 Location: 31522-31810 bp Feature: domain Description: TnpB_IS66 Location: 3152 2 -31810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RhtB (COG1280), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: WIRL01000108.1 Sinorhizobium meliloti strain HM007-17 contig_108, whole genome shotgun sequence (13847 bp)
Overview 1 RT 1: 10199-13707 bp Neighborhood of RT #1 [10199, 13793] AraC_N AraC DltE RVT-GII GIIM Feature: gene Location: 10199-11134 bp Feature: domain Description: AraC_N Location: 10277-10727 bp Feature: domain Description: AraC_N Location: 10277-10727 bp Feature: domain Description: AraC Location: 10760-11063 bp Feature: domain Description: AraC Location: 10760-11063 bp Feature: gene Location: 11369-12022 bp Feature: domain Description: DltE Location: 11372-11990 bp Feature: domain Description: DltE Location: 113 72-11990 bp Feature: gene Location: 12585-13793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12750-13404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12750-13 404 bp Feature: domain Description: GIIM Note: maturase Location: 13485-13707 bp Feature: domain Description: GIIM Note: maturase Location: 13 485-13 707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_N (pfam06719), AraC (COG2207), DltE (COG3967), RVT-GII, GIIM (pfam08388)

Seq: WIRL01000011.1 Sinorhizobium meliloti strain HM007-17 contig_11, whole genome shotgun sequence (262352 bp)
Overview 1 RT 1: 122661-128710 bp 2 RT 2: 258618-261695 bp Neighborhood of RT #1 [122661, 128826] hutH PRK09356 RVT-GII GIIM AraJ HTH_ARSR Neighborhood of RT #2 [258618, 261781] THN_reductase-like_SDR_c RVT-GII GIIM Feature: gene Location: 122661-124196 bp Feature: domain Description: hutH Location: 122670-124185 bp Feature: domain Description: hutH Location: 122670-124 185 bp Feature: gene Location: 124193-125563 bp Feature: domain Description: PRK09356 Location: 124352-125555 bp Feature: domain Description: PRK09356 Location: 124 352-125555 bp Feature: gene Location: 125643-127004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125970-126585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125970-126585 bp Feature: domain Description: GIIM Note: maturase Location: 126639-126858 bp Feature: domain Description: GIIM Note: maturase Location: 126639-126858 bp Feature: gene Location: 127181-128365 bp Feature: domain Description: AraJ Location: 127184-128342 bp Feature: domain Description: AraJ Location: 127184 -12834 2 bp Feature: gene Location: 128455-128826 bp Feature: domain Description: HTH_ARSR Location: 128512-128710 bp Feature: domain Description: HTH_ARSR Location: 128512-128710 bp Feature: gene Location: 258618-259139 bp Feature: gene Location: 259376-260266 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 259547-260261 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 25954 7-260261 bp Feature: gene Location: 260573-261781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260738-261392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260738-261392 bp Feature: domain Description: GIIM Note: maturase Location: 261473-261695 bp Feature: domain Description: GIIM Note: maturase Location: 2614 73-261695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388), AraJ (COG2814), HTH_ARSR (smart00418), THN_reductase-like_SDR_c (cd05362)

Seq: WIRL01000123.1 Sinorhizobium meliloti strain HM007-17 contig_123, whole genome shotgun sequence (2867 bp)
Overview 1 RT 1: 2-2727 bp Neighborhood of RT #1 [2, 2813] DDE_Tnp_1_assoc YhhI COG3415 RVT-GII GIIM Feature: gene Location: 2-625 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 20-269 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 20-269 bp Feature: domain Description: YhhI Location: 416-584 bp Feature: domain Description: YhhI Location: 416-5 84 bp Feature: gene Location: 717-959 bp Feature: domain Description: COG3415 Location: 720-957 bp Feature: domain Description: COG3415 Location: 720-95 7 bp Feature: gene Location: 1554-2813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770-2424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2505-2727 bp Feature: domain Description: GIIM Note: maturase Location: 25 05 -2727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), COG3415 (Transposase )

Seq: WIRL01000054.1 Sinorhizobium meliloti strain HM007-17 contig_54, whole genome shotgun sequence (2217 bp)
Overview 1 RT 1: 1-2077 bp Neighborhood of RT #1 [1, 2163] COG3415 RVT-GII GIIM Feature: gene Location: 1-309 bp Feature: domain Description: COG3415 Location: 4-307 bp Feature: domain Description: COG3415 Location: 4-307 bp Feature: gene Location: 904-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1774 bp Feature: domain Description: GIIM Note: maturase Location: 1855-2077 bp Feature: domain Description: GIIM Note: maturase Location: 1855-2077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388)