myRT

myRT report for GCA_009600285.1_ASM960028v1

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Seq: WIWE01000015.1 Pseudomonas sp. FSL R10-2398 NODE_15_length_85487_cov_76.405503, whole genome shotgun sequence (85487 bp)
Overview 1 RT 1: 31218-35878 bp Neighborhood of RT #1 [31218, 37107] PRK00024 RVT-GII DLP_2 DLP_helical Baculo_PEP_C MMR_HSR1 MMR_HSR1 Feature: gene Location: 31218-32144 bp Feature: gene Location: 32192-32689 bp Feature: domain Description: PRK00024 Location: 32270-32684 bp Feature: domain Description: PRK00024 Location: 32270-32684 bp Feature: gene Location: 32982-33167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32991-33135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32991 -331 35 bp Feature: gene Location: 33191-34897 bp Feature: domain Description: DLP_2 Location: 33491-33767 bp Feature: domain Description: DLP_2 Location: 33491 -33767 bp Feature: domain Description: DLP_helical Location: 33833-34832 bp Feature: domain Description: DLP_helical Location: 33833-34832 bp Feature: gene Location: 34897-37107 bp Feature: domain Description: Baculo_PEP_C Location: 34924-35080 bp Feature: domain Description: Baculo_PEP_C Location: 34924-35080 bp Feature: domain Description: MMR_HSR1 Location: 35110-35221 bp Feature: domain Description: MMR_HSR1 Location: 351 1 0-35221 bp Feature: domain Description: MMR_HSR1 Location: 35671-35878 bp Feature: domain Description: MMR_HSR1 Location: 35671 -35878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT-GII, DLP_2 (cd09912), DLP_helical (pfam18709), Baculo_PEP_C (pfam04513), MMR_HSR1 (pfam01926)

Seq: WIWE01000001.1 Pseudomonas sp. FSL R10-2398 NODE_1_length_385713_cov_57.852592, whole genome shotgun sequence (385713 bp)
Overview 1 RT 1: 63133-68204 bp Neighborhood of RT #1 [63133, 68224] MFS_spinster_like RVT-GII GIIM DUF1329 Feature: gene Location: 63133-63366 bp Feature: gene Location: 63338-64729 bp Feature: domain Description: MFS_spinster_like Location: 63446-64649 bp Feature: domain Description: MFS_spinster_like Location: 63446-64649 bp Feature: gene Location: 64944-66365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65301-65916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65301-65916 bp Feature: domain Description: GIIM Note: maturase Location: 65973-66198 bp Feature: domain Description: GIIM Note: maturase Location: 65973-66198 bp Feature: gene Location: 66500-66685 bp Feature: gene Location: 66842-68224 bp Feature: domain Description: DUF1329 Location: 67115-68204 bp Feature: domain Description: DUF132 9 Location: 67115-682 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_spinster_like (cd17328), RVT-GII, GIIM (pfam08388), DUF1329 (pfam07044)

Seq: WIWE01000257.1 Pseudomonas sp. FSL R10-2398 NODE_257_length_491_cov_1.729469, whole genome shotgun sequence (491 bp)
Overview 1 RT 1: 3-489 bp Neighborhood of RT #1 [3, 488] RVT-GII GIIM Feature: gene Location: 3-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-249 bp Feature: domain Description: GIIM Note: maturase Location: 306-489 bp Feature: domain Description: GIIM Note: maturase Location: 3 06-489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIWE01000090.1 Pseudomonas sp. FSL R10-2398 NODE_90_length_22872_cov_89.778811, whole genome shotgun sequence (22872 bp)
Overview 1 RT 1: 85-4248 bp Neighborhood of RT #1 [85, 4248] RVT-Retrons Feature: gene Location: 85-1071 bp Feature: gene Location: 1342-3108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1477-2104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 77-2104 bp Feature: gene Location: 3227-3616 bp Feature: gene Location: 3841-4248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons