myRT

myRT report for GCA_009600405.1_ASM960040v1

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Seq: WIVV01000282.1 Pseudomonas helleri strain FSL R10-1876 NODE_282_length_2270_cov_540.656635, whole genome shotgun sequence (2270 bp)
Overview 1 RT 1: 92-2267 bp Neighborhood of RT #1 [92, 2267] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1 097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72-1 391 bp Feature: gene Location: 1755-1985 bp Feature: gene Location: 2109-2267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIVV01000303.1 Pseudomonas helleri strain FSL R10-1876 NODE_303_length_1569_cov_118.198391, whole genome shotgun sequence (1569 bp)
Overview 1 RT 1: 1-1567 bp Neighborhood of RT #1 [1, 1567] RVT-GII GIIM Feature: gene Location: 1-1248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-808 bp Feature: domain Description: GIIM Note: maturase Location: 865-1090 bp Feature: domain Description: GIIM Note: maturase Location: 865-1090 bp Feature: gene Location: 1253-1567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIVV01000313.1 Pseudomonas helleri strain FSL R10-1876 NODE_313_length_1269_cov_174.565436, whole genome shotgun sequence (1269 bp)
Overview 1 RT 1: 3-1241 bp Neighborhood of RT #1 [3, 1241] RVT-GII Feature: gene Location: 3-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 6-888 bp Feature: gene Location: 1107-1241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIVV01000336.1 Pseudomonas helleri strain FSL R10-1876 NODE_336_length_902_cov_283.606061, whole genome shotgun sequence (902 bp)
Overview 1 RT 1: 3-880 bp Neighborhood of RT #1 [3, 880] RVT-GII Feature: gene Location: 3-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-510 bp Feature: gene Location: 668-880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIVV01000348.1 Pseudomonas helleri strain FSL R10-1876 NODE_348_length_740_cov_844.346908, whole genome shotgun sequence (740 bp)
Overview 1 RT 1: 1-739 bp Neighborhood of RT #1 [1, 738] RVT-GII Feature: gene Location: 1-738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202-739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIVV01000397.1 Pseudomonas helleri strain FSL R10-1876 NODE_397_length_407_cov_208.954545, whole genome shotgun sequence (407 bp)
Overview 1 RT 1: 3-405 bp Neighborhood of RT #1 [3, 404] RVT-GII Feature: gene Location: 3-404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WIVV01000404.1 Pseudomonas helleri strain FSL R10-1876 NODE_404_length_383_cov_838.764706, whole genome shotgun sequence (383 bp)
Overview 1 RT 1: 1-382 bp Neighborhood of RT #1 [1, 381] RVT-GII GIIM Feature: gene Location: 1-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -142 bp Feature: domain Description: GIIM Note: maturase Location: 199-382 bp Feature: domain Description: GIIM Note: maturase Location: 199-382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIVV01000405.1 Pseudomonas helleri strain FSL R10-1876 NODE_405_length_383_cov_240.562092, whole genome shotgun sequence (383 bp)
Overview 1 RT 1: 1-382 bp Neighborhood of RT #1 [1, 381] RVT-GII GIIM Feature: gene Location: 1-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-142 bp Feature: domain Description: GIIM Note: maturase Location: 199-382 bp Feature: domain Description: GIIM Note: maturase Location: 199-38 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WIVV01000041.1 Pseudomonas helleri strain FSL R10-1876 NODE_41_length_36525_cov_148.072679, whole genome shotgun sequence (36525 bp)
Overview 1 RT 1: 7205-14891 bp Neighborhood of RT #1 [7205, 14956] excise COG2865 RVT-UG8 RVT-UG3 SLATT_5 HTH_31 Feature: gene Location: 7205-7672 bp Feature: domain Description: excise Location: 7457-7598 bp Feature: domain Description: excise Location: 7457-759 8 bp Feature: gene Location: 8191-9834 bp Feature: domain Description: COG2865 Location: 8227-9397 bp Feature: domain Description: COG2865 Location: 8227-9 39 7 bp Feature: gene Location: 10775-12763 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11303-11750 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 11303-11750 bp Feature: gene Location: 12766-14031 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 13048-13546 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 13048-13546 bp Feature: gene Location: 14067-14642 bp Feature: domain Description: SLATT_5 Location: 14085-14613 bp Feature: domain Description: SLATT_5 Location: 14085-14613 bp Feature: gene Location: 14696-14956 bp Feature: domain Description: HTH_31 Location: 14741-14891 bp Feature: domain Description: HTH_31 Location: 14741-1489 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT excise (TIGR01764), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG8, RVT-UG3, SLATT_5 (pfam18160), HTH_31 (pfam13560)

Seq: WIVV01000043.1 Pseudomonas helleri strain FSL R10-1876 NODE_43_length_35498_cov_82.978459, whole genome shotgun sequence (35498 bp)
Overview 1 RT 1: 31464-34728 bp Neighborhood of RT #1 [31464, 34748] DUF1566 Avd_like RVT-DGRs AlpA Feature: gene Location: 31464-32081 bp Feature: domain Description: DUF1566 Location: 31701-32061 bp Feature: domain Description: DUF1566 Location: 31701-32061 bp Feature: gene Location: 32137-32493 bp Feature: domain Description: Avd_like Location: 32164-32473 bp Feature: domain Description: Avd_like Location: 32164-32473 bp Feature: gene Location: 32852-33865 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32957-33641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32957-33641 bp Feature: gene Location: 33907-34446 bp Feature: gene Location: 34536-34748 bp Feature: domain Description: AlpA Location: 34554-34728 bp Feature: domain Description: AlpA Location: 34554-34728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, AlpA (COG3311)