myRT

myRT report for GCA_009600675.1_ASM960067v1

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Seq: SQRB01000036.1 Escherichia coli strain RXD097 E_coli_RXD97_ctg0036, whole genome shotgun sequence (13912 bp)
Overview 1 RT 1: 123-4154 bp Neighborhood of RT #1 [123, 4171] PRK09692 RVT-UG7 Psu Feature: gene Location: 123-938 bp Feature: domain Description: PRK09692 Location: 135-915 bp Feature: domain Description: PRK09692 Location: 1 35-91 5 bp Feature: gene Location: 931-2559 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1339-1768 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 339-1 768 bp Feature: gene Location: 2556-3296 bp Feature: gene Location: 3599-4171 bp Feature: domain Description: Psu Location: 3617-4154 bp Feature: domain Description: Psu Location: 361 7-41 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: SQRB01000069.1 Escherichia coli strain RXD097 E_coli_RXD97_ctg0069, whole genome shotgun sequence (2470 bp)
Overview 1 RT 1: 93-2468 bp Neighborhood of RT #1 [93, 2468] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 9-1071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 112 2 -1356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-172 5 bp Feature: gene Location: 2040-2222 bp Feature: gene Location: 2334-2468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)