myRT

myRT report for GCA_009600765.1_ASM960076v1

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Seq: SQQX01000014.1 Escherichia coli strain RXD020 E_coli_RXD20_ctg0014, whole genome shotgun sequence (124565 bp)
Overview 1 RT 1: 79208-81620 bp 2 RT 2: 118344-121309 bp Neighborhood of RT #1 [79208, 81694] PHA02517 InsE RVT-GII RVT-GII IS285 Neighborhood of RT #2 [118344, 123876] HEPN_Apea GerD RVT-UG1 Feature: gene Location: 79208-79909 bp Feature: domain Description: PHA02517 Location: 79226-79904 bp Feature: domain Description: PHA0251 7 Location: 79226-79904 bp Feature: gene Location: 80050-80352 bp Feature: domain Description: InsE Location: 80053-80338 bp Feature: domain Description: InsE Location: 80053-80338 bp Feature: gene Location: 80391-80594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80436-80592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80436-80592 bp Feature: gene Location: 80628-80864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80631-80811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80631 -8081 1 bp Feature: gene Location: 80922-81059 bp Feature: gene Location: 81212-81694 bp Feature: domain Description: IS285 Location: 81242-81620 bp Feature: domain Description: IS285 Location: 81 242-81 620 bp Feature: gene Location: 118344-119447 bp Feature: domain Description: HEPN_Apea Location: 118416-118731 bp Feature: domain Description: HEPN_Apea Location: 1 1 841 6-1 1 8731 bp Feature: gene Location: 119744-120178 bp Feature: domain Description: GerD Location: 119822-119936 bp Feature: domain Description: GerD Location: 1 1 9822-1 1 9936 bp Feature: gene Location: 120187-123876 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 120799-121309 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 20799-1 21 309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, IS285 (COG3328), HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1

Seq: SQQX01000052.1 Escherichia coli strain RXD020 E_coli_RXD20_ctg0052, whole genome shotgun sequence (18466 bp)
Overview 1 RT 1: 2364-6364 bp Neighborhood of RT #1 [2364, 6372] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2364-3725 bp Feature: domain Description: DcuC Location: 2367-3699 bp Feature: domain Description: DcuC Location: 2 367-3699 bp Feature: gene Location: 3778-4149 bp Feature: gene Location: 4371-4817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4677-4779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4677-4779 bp Feature: gene Location: 4865-5014 bp Feature: gene Location: 5341-6372 bp Feature: domain Description: Asparaginase_2 Location: 5431-6364 bp Feature: domain Description: Asparaginase_2 Location: 5431-6364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: SQQX01000060.1 Escherichia coli strain RXD020 E_coli_RXD20_ctg0060, whole genome shotgun sequence (13943 bp)
Overview 1 RT 1: 2869-6472 bp Neighborhood of RT #1 [2869, 6597] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2869-3126 bp Feature: gene Location: 3157-3432 bp Feature: gene Location: 4006-5673 bp Feature: domain Description: RVT_N Location: 4054-4291 bp Feature: domain Description: RVT_N Location: 4054-4291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4342-4984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 42-4984 bp Feature: domain Description: GIIM Note: maturase Location: 5035-5269 bp Feature: domain Description: GIIM Note: maturase Location: 503 5-5269 bp Feature: domain Description: HNHc Note: nucleases Location: 5479-5638 bp Feature: domain Description: HNHc Note: nucleases Location: 5479-563 8 bp Feature: gene Location: 5987-6178 bp Feature: gene Location: 6175-6597 bp Feature: domain Description: DUF1380 Location: 6178-6472 bp Feature: domain Description: DUF13 80 Location: 6178-6472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: SQQX01000101.1 Escherichia coli strain RXD020 E_coli_RXD20_ctg0101, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)