myRT

myRT report for GCA_009600785.1_ASM960078v1

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Seq: SQQV01000024.1 Escherichia coli strain RXD011 E_coli_RXD11_ctg0024, whole genome shotgun sequence (76812 bp)
Overview 1 RT 1: 11340-16186 bp Neighborhood of RT #1 [11340, 16186] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 11340-12773 bp Feature: domain Description: DUF3987 Location: 11433-12510 bp Feature: domain Description: DUF3987 Location: 1 1 433-1 251 0 bp Feature: gene Location: 13632-14195 bp Feature: domain Description: Inovirus_Gp2 Location: 13689-14130 bp Feature: domain Description: Inovirus_Gp2 Location: 1 3689-1 41 30 bp Feature: gene Location: 14521-15684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14635-15322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4635-1 5322 bp Feature: gene Location: 15671-15979 bp Feature: gene Location: 16013-16186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: SQQV01000028.1 Escherichia coli strain RXD011 E_coli_RXD11_ctg0028, whole genome shotgun sequence (54407 bp)
Overview 1 RT 1: 4100-9427 bp Neighborhood of RT #1 [4100, 9429] Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 4100-4372 bp Feature: domain Description: Phage_fiber Location: 4190-4214 bp Feature: domain Description: Phage_fiber Location: 4190-42 14 bp Feature: domain Description: Phage_fiber Location: 4220-4253 bp Feature: domain Description: Phage_fiber Location: 42 2 0-42 53 bp Feature: gene Location: 4372-4956 bp Feature: domain Description: Caudo_TAP Location: 4588-4945 bp Feature: domain Description: Caudo_TAP Location: 4588-4945 bp Feature: gene Location: 5401-7005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5692-6283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5692 -62 83 bp Feature: domain Description: TIR_2 Location: 6610-6943 bp Feature: domain Description: TIR_2 Location: 6610-6943 bp Feature: gene Location: 7363-7623 bp Feature: domain Description: PRK10597 Location: 7366-7606 bp Feature: domain Description: PRK10597 Location: 7366-7606 bp Feature: gene Location: 7843-9429 bp Feature: domain Description: prfC Location: 7861-9427 bp Feature: domain Description: prfC Location: 7861-942 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: SQQV01000106.1 Escherichia coli strain RXD011 E_coli_RXD11_ctg0106, whole genome shotgun sequence (3833 bp)
Overview 1 RT 1: 368-3828 bp Neighborhood of RT #1 [368, 3830] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 368-550 bp Feature: gene Location: 830-2497 bp Feature: RT Description: RVT_N Location: 878-1115 bp Feature: RT Description: RVT_N Location: 878-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166-1808 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2093 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2093 bp Feature: domain Description: HNHc Note: nucleases Location: 2303-2462 bp Feature: domain Description: HNHc Note: nucleases Location: 23 03 -2462 bp Feature: gene Location: 2999-3421 bp Feature: domain Description: DUF1380 Location: 3002-3299 bp Feature: domain Description: DUF13 80 Location: 3 002-3 299 bp Feature: gene Location: 3468-3830 bp Feature: domain Description: Antirestrict Location: 3540-3828 bp Feature: domain Description: Antirestrict Location: 3 540-3 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), Antirestrict (pfam03230), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SQQV01000141.1 Escherichia coli strain RXD011 E_coli_RXD11_ctg0141, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 834-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SQQV01000206.1 Escherichia coli strain RXD011 E_coli_RXD11_ctg0206, whole genome shotgun sequence (980 bp)
Overview 1 RT 1: 2-644 bp Neighborhood of RT #1 [2, 706] RVT-GII Feature: gene Location: 2-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII