myRT

myRT report for GCA_009600795.1_ASM960079v1

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Seq: SQQW01000014.1 Escherichia coli strain RXD012 E_coli_RXD12_ctg0014, whole genome shotgun sequence (124565 bp)
Overview 1 RT 1: 79208-81620 bp 2 RT 2: 118344-121309 bp Neighborhood of RT #1 [79208, 81694] PHA02517 InsE RVT-GII RVT-GII IS285 Neighborhood of RT #2 [118344, 123876] HEPN_Apea GerD RVT-UG1 Feature: gene Location: 79208-79909 bp Feature: domain Description: PHA02517 Location: 79226-79904 bp Feature: domain Description: PHA0251 7 Location: 79226-79904 bp Feature: gene Location: 80050-80352 bp Feature: domain Description: InsE Location: 80053-80338 bp Feature: domain Description: InsE Location: 80053-80338 bp Feature: gene Location: 80391-80594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80436-80592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80436-80592 bp Feature: gene Location: 80628-80864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80631-80811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80631 -8081 1 bp Feature: gene Location: 80922-81059 bp Feature: gene Location: 81212-81694 bp Feature: domain Description: IS285 Location: 81242-81620 bp Feature: domain Description: IS285 Location: 81 242-81 620 bp Feature: gene Location: 118344-119447 bp Feature: domain Description: HEPN_Apea Location: 118416-118731 bp Feature: domain Description: HEPN_Apea Location: 1 1 841 6-1 1 8731 bp Feature: gene Location: 119744-120178 bp Feature: domain Description: GerD Location: 119822-119936 bp Feature: domain Description: GerD Location: 1 1 9822-1 1 9936 bp Feature: gene Location: 120187-123876 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 120799-121309 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 20799-1 21 309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, IS285 (COG3328), HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1

Seq: SQQW01000053.1 Escherichia coli strain RXD012 E_coli_RXD12_ctg0053, whole genome shotgun sequence (18538 bp)
Overview 1 RT 1: 12167-16149 bp Neighborhood of RT #1 [12167, 16175] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 12167-13198 bp Feature: domain Description: Asparaginase_2 Location: 12257-13190 bp Feature: domain Description: Asparaginase_2 Location: 12 2 57-13190 bp Feature: gene Location: 13525-13674 bp Feature: gene Location: 13722-14168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14028-14130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402 8-14130 bp Feature: gene Location: 14390-14761 bp Feature: gene Location: 14814-16175 bp Feature: domain Description: DcuC Location: 14817-16149 bp Feature: domain Description: DcuC Location: 14817-16149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: SQQW01000061.1 Escherichia coli strain RXD012 E_coli_RXD12_ctg0061, whole genome shotgun sequence (13943 bp)
Overview 1 RT 1: 2869-6472 bp Neighborhood of RT #1 [2869, 6597] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2869-3126 bp Feature: gene Location: 3157-3432 bp Feature: gene Location: 4006-5673 bp Feature: domain Description: RVT_N Location: 4054-4291 bp Feature: domain Description: RVT_N Location: 4054-4291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4342-4984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 42-4984 bp Feature: domain Description: GIIM Note: maturase Location: 5035-5269 bp Feature: domain Description: GIIM Note: maturase Location: 503 5-5269 bp Feature: domain Description: HNHc Note: nucleases Location: 5479-5638 bp Feature: domain Description: HNHc Note: nucleases Location: 5479-563 8 bp Feature: gene Location: 5987-6178 bp Feature: gene Location: 6175-6597 bp Feature: domain Description: DUF1380 Location: 6178-6472 bp Feature: domain Description: DUF13 80 Location: 6178-6472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: SQQW01000102.1 Escherichia coli strain RXD012 E_coli_RXD12_ctg0102, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)