myRT

myRT report for GCA_009600805.1_ASM960080v1

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Seq: SQQT01000025.1 Escherichia coli strain RXD005 E_coli_RXD5_ctg0025, whole genome shotgun sequence (77472 bp)
Overview 1 RT 1: 66463-72915 bp Neighborhood of RT #1 [66463, 72915] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 66463-66768 bp Feature: gene Location: 67651-69927 bp Feature: domain Description: AAA_15 Location: 67684-68692 bp Feature: domain Description: AAA_1 5 Location: 67684-68692 bp Feature: gene Location: 70042-71142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70225-70753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70225-70753 bp Feature: gene Location: 71798-72634 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 72287-72458 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 72287-72458 bp Feature: gene Location: 72664-72915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: SQQT01000118.1 Escherichia coli strain RXD005 E_coli_RXD5_ctg0118, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2 068-2 2 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SQQT01000120.1 Escherichia coli strain RXD005 E_coli_RXD5_ctg0120, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SQQT01000438.1 Escherichia coli strain RXD005 E_coli_RXD5_ctg0438, whole genome shotgun sequence (657 bp)
Overview 1 RT 1: 370-583 bp Neighborhood of RT #1 [370, 654] RVT-CRISPR-like Feature: gene Location: 370-654 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 373-583 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 373-583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: SQQT01000593.1 Escherichia coli strain RXD005 E_coli_RXD5_ctg0593, whole genome shotgun sequence (576 bp)
Overview 1 RT 1: 1-568 bp Neighborhood of RT #1 [1, 573] RVT-GII Feature: gene Location: 1-573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-5 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII