myRT

myRT report for GCA_009600815.1_ASM960081v1

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Seq: SQQU01000023.1 Escherichia coli strain RXD010 E_coli_RXD10_ctg0023, whole genome shotgun sequence (85812 bp)
Overview 1 RT 1: 81998-85746 bp Neighborhood of RT #1 [81998, 85811] QdoI PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 81998-82348 bp Feature: domain Description: QdoI Location: 82064-82316 bp Feature: domain Description: QdoI Location: 82064-8231 6 bp Feature: gene Location: 82951-83397 bp Feature: domain Description: PHA02517 Location: 82954-83395 bp Feature: domain Description: PHA0251 7 Location: 82954-83395 bp Feature: gene Location: 83514-85037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83787-84519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83787-8451 9 bp Feature: domain Description: GIIM Note: maturase Location: 84594-84792 bp Feature: domain Description: GIIM Note: maturase Location: 84594-84792 bp Feature: gene Location: 84991-85416 bp Feature: gene Location: 85629-85811 bp Feature: domain Description: PHA02517 Location: 85632-85746 bp Feature: domain Description: PHA0251 7 Location: 85632-85746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: SQQU01000025.1 Escherichia coli strain RXD010 E_coli_RXD10_ctg0025, whole genome shotgun sequence (77472 bp)
Overview 1 RT 1: 66463-72915 bp Neighborhood of RT #1 [66463, 72915] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 66463-66768 bp Feature: gene Location: 67651-69927 bp Feature: domain Description: AAA_15 Location: 67684-68692 bp Feature: domain Description: AAA_15 Location: 67684-68692 bp Feature: gene Location: 70042-71142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70225-70753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 702 2 5-70753 bp Feature: gene Location: 71798-72634 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 72287-72458 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 72 2 87-72 458 bp Feature: gene Location: 72664-72915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: SQQU01000115.1 Escherichia coli strain RXD010 E_coli_RXD10_ctg0115, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643 -880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SQQU01000259.1 Escherichia coli strain RXD010 E_coli_RXD10_ctg0259, whole genome shotgun sequence (672 bp)
Overview 1 RT 1: 2-669 bp Neighborhood of RT #1 [2, 671] RVT-GII Feature: gene Location: 2-283 bp Feature: gene Location: 384-671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 597-669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SQQU01000338.1 Escherichia coli strain RXD010 E_coli_RXD10_ctg0338, whole genome shotgun sequence (581 bp)
Overview 1 RT 1: 49-454 bp Neighborhood of RT #1 [49, 516] RVT-GII Feature: gene Location: 49-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55-454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 -45 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII