myRT

myRT report for GCA_009601205.1_ASM960120v1

Download annotations/find similar RTs

Seq: WISM01000155.1 Sinorhizobium meliloti strain M249 contig_155, whole genome shotgun sequence (7214 bp)
Overview 1 RT 1: 3376-7063 bp Neighborhood of RT #1 [3376, 7212] hutH PRK09356 RVT-GII GIIM Feature: gene Location: 3376-4911 bp Feature: domain Description: hutH Location: 3385-4900 bp Feature: domain Description: hutH Location: 3385-4900 bp Feature: gene Location: 4908-6278 bp Feature: domain Description: PRK09356 Location: 5067-6270 bp Feature: domain Description: PRK09356 Location: 5067-6270 bp Feature: gene Location: 6358-7212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397-6793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6397-6793 bp Feature: domain Description: GIIM Note: maturase Location: 6847-7063 bp Feature: domain Description: GIIM Note: maturase Location: 6847-7063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388)

Seq: WISM01000163.1 Sinorhizobium meliloti strain M249 contig_163, whole genome shotgun sequence (2798 bp)
Overview 1 RT 1: 1-1922 bp Neighborhood of RT #1 [1, 1945] COG3415 RVT-GII GIIM Transposase_mut PinE Feature: gene Location: 1-132 bp Feature: domain Description: COG3415 Location: 4-133 bp Feature: domain Description: COG3415 Location: 4-133 bp Feature: gene Location: 302-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332-536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 -536 bp Feature: domain Description: GIIM Note: maturase Location: 605-875 bp Feature: domain Description: GIIM Note: maturase Location: 605-875 bp Feature: gene Location: 1117-1356 bp Feature: domain Description: Transposase_mut Location: 1123-1312 bp Feature: domain Description: Transposase_mut Location: 112 3-1312 bp Feature: gene Location: 1517-1945 bp Feature: domain Description: PinE Location: 1565-1922 bp Feature: domain Description: PinE Location: 1565-192 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), PinE (COG1961)

Seq: WISM01000164.1 Sinorhizobium meliloti strain M249 contig_164, whole genome shotgun sequence (1212 bp)
Overview 1 RT 1: 1-1106 bp Neighborhood of RT #1 [1, 1144] COG3415 RVT-GII Feature: gene Location: 1-132 bp Feature: domain Description: COG3415 Location: 4-133 bp Feature: domain Description: COG3 415 Location: 4-13 3 bp Feature: gene Location: 209-1144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563 -1106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII

Seq: WISM01000171.1 Sinorhizobium meliloti strain M249 contig_171, whole genome shotgun sequence (22462 bp)
Overview 1 RT 1: 18871-22431 bp Neighborhood of RT #1 [18871, 22460] RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 18871-19539 bp Feature: gene Location: 19640-19927 bp Feature: gene Location: 19975-21798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20713-21403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20713-214 03 bp Feature: gene Location: 21900-22460 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21906-22299 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21906-22299 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22320-22431 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 22320-224 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: WISM01000184.1 Sinorhizobium meliloti strain M249 contig_184, whole genome shotgun sequence (4551 bp)
Overview 1 RT 1: 1-2471 bp Neighborhood of RT #1 [1, 2506] RVT-GII COG3547 Feature: gene Location: 1-873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 5 -871 bp Feature: gene Location: 1103-1480 bp Feature: gene Location: 1499-2506 bp Feature: domain Description: COG3547 Location: 1517-2471 bp Feature: domain Description: COG35 47 Location: 15 17-2471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: WISM01000185.1 Sinorhizobium meliloti strain M249 contig_185, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 1-1655 bp Neighborhood of RT #1 [1, 1717] RVT-GII Transposase_mut Feature: gene Location: 1-810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-808 bp Feature: gene Location: 1421-1717 bp Feature: domain Description: Transposase_mut Location: 1430-1655 bp Feature: domain Description: Transposase_mut Location: 1430-16 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_mut (pfam00872)

Seq: WISM01000270.1 Sinorhizobium meliloti strain M249 contig_270, whole genome shotgun sequence (7867 bp)
Overview 1 RT 1: 3099-7815 bp Neighborhood of RT #1 [3099, 7865] RVT-GII RVT-GII GIIM HTH_32 DDE_3 Feature: gene Location: 3099-3347 bp Feature: gene Location: 3817-4092 bp Feature: gene Location: 4433-5485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5174-5483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517 4-5483 bp Feature: gene Location: 5605-6156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5614-5824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5614-5824 bp Feature: domain Description: GIIM Note: maturase Location: 5902-6103 bp Feature: domain Description: GIIM Note: maturase Location: 5902-6103 bp Feature: gene Location: 6187-6324 bp Feature: gene Location: 6807-7865 bp Feature: domain Description: HTH_32 Location: 7059-7272 bp Feature: domain Description: HTH_32 Location: 7 059-7 27 2 bp Feature: domain Description: DDE_3 Location: 7395-7815 bp Feature: domain Description: DDE_3 Location: 7 395-7 815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358)

Seq: WISM01000043.1 Sinorhizobium meliloti strain M249 contig_43, whole genome shotgun sequence (13023 bp)
Overview 1 RT 1: 860-3597 bp Neighborhood of RT #1 [860, 3597] RVT-GII Feature: gene Location: 860-1066 bp Feature: gene Location: 1249-1428 bp Feature: gene Location: 1582-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1588-2197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158 8 -2197 bp Feature: gene Location: 2587-3372 bp Feature: gene Location: 3394-3597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WISM01000078.1 Sinorhizobium meliloti strain M249 contig_78, whole genome shotgun sequence (1000 bp)
Overview 1 RT 1: 1-969 bp Neighborhood of RT #1 [1, 998] RVT-GII GIIM RVT-GII Feature: gene Location: 1-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-289 bp Feature: domain Description: GIIM Note: maturase Location: 343-451 bp Feature: domain Description: GIIM Note: maturase Location: 343-451 bp Feature: gene Location: 525-998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-9 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WISM01000079.1 Sinorhizobium meliloti strain M249 contig_79, whole genome shotgun sequence (1000 bp)
Overview 1 RT 1: 1-969 bp Neighborhood of RT #1 [1, 998] RVT-GII GIIM RVT-GII Feature: gene Location: 1-450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-289 bp Feature: domain Description: GIIM Note: maturase Location: 343-451 bp Feature: domain Description: GIIM Note: maturase Location: 343-451 bp Feature: gene Location: 525-998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WISM01000080.1 Sinorhizobium meliloti strain M249 contig_80, whole genome shotgun sequence (2575 bp)
Overview 1 RT 1: 3-2564 bp Neighborhood of RT #1 [3, 2572] RVT-GII GIIM groEL Feature: gene Location: 3-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-438 bp Feature: domain Description: GIIM Note: maturase Location: 492-708 bp Feature: domain Description: GIIM Note: maturase Location: 492-708 bp Feature: gene Location: 1106-2572 bp Feature: domain Description: groEL Location: 1109-2564 bp Feature: domain Description: groEL Location: 11 09-2564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), groEL (PRK12852)

Seq: WISM01000081.1 Sinorhizobium meliloti strain M249 contig_81, whole genome shotgun sequence (126347 bp)
Overview 1 RT 1: 3-2261 bp Neighborhood of RT #1 [3, 2275] RVT-GII GIIM DUF3018 fabG Feature: gene Location: 3-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42-438 bp Feature: domain Description: GIIM Note: maturase Location: 492-708 bp Feature: domain Description: GIIM Note: maturase Location: 492-708 bp Feature: gene Location: 1170-1310 bp Feature: domain Description: DUF3018 Location: 1176-1299 bp Feature: domain Description: DUF3018 Location: 1176-12 99 bp Feature: gene Location: 1493-2275 bp Feature: domain Description: fabG Location: 1511-2261 bp Feature: domain Description: fabG Location: 1511-2261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3018 (pfam11455), fabG (PRK12825)

Seq: WISM01000087.1 Sinorhizobium meliloti strain M249 contig_87, whole genome shotgun sequence (3928 bp)
Overview 1 RT 1: 300-1385 bp Neighborhood of RT #1 [300, 1396] RVT-GII IS285 Feature: gene Location: 300-605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-483 bp Feature: gene Location: 661-879 bp Feature: gene Location: 1205-1396 bp Feature: domain Description: IS285 Location: 1271-1385 bp Feature: domain Description: IS285 Location: 1271-13 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328)