myRT

myRT report for GCA_009601405.1_ASM960140v1

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Seq: WISZ01000105.1 Sinorhizobium fredii strain USDA205 contig_105, whole genome shotgun sequence (8565 bp)
Overview 1 RT 1: 2176-6966 bp Neighborhood of RT #1 [2176, 7091] COG4644 RVT-GII RVT-GII HTH_21 HTH_Tnp_1 Feature: gene Location: 2176-2505 bp Feature: domain Description: COG4644 Location: 2191-2500 bp Feature: domain Description: COG4644 Location: 21 91 -2500 bp Feature: gene Location: 2506-3351 bp Feature: gene Location: 3357-4127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-3972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-3972 bp Feature: gene Location: 4415-4588 bp Feature: gene Location: 4920-6245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5175-5865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 75-5865 bp Feature: gene Location: 6436-6669 bp Feature: domain Description: HTH_21 Location: 6445-6550 bp Feature: domain Description: HTH_21 Location: 6445-6550 bp Feature: gene Location: 6741-7091 bp Feature: domain Description: HTH_Tnp_1 Location: 6744-6966 bp Feature: domain Description: HTH_Tnp_1 Location: 6744-6966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4644 (Transposase and inactivated derivatives, TnpA family ), RVT-GII, HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527)

Seq: WISZ01000195.1 Sinorhizobium fredii strain USDA205 contig_195, whole genome shotgun sequence (12460 bp)
Overview 1 RT 1: 9870-11892 bp Neighborhood of RT #1 [9870, 12254] Y2_Tnp RVT-GII Feature: gene Location: 9870-10277 bp Feature: gene Location: 10848-11297 bp Feature: domain Description: Y2_Tnp Location: 11010-11103 bp Feature: domain Description: Y2 _Tnp Location: 11010-11103 bp Feature: gene Location: 11373-12254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11388-11892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11388-11892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-GII

Seq: WISZ01000216.1 Sinorhizobium fredii strain USDA205 contig_216, whole genome shotgun sequence (46184 bp)
Overview 1 RT 1: 39514-43118 bp Neighborhood of RT #1 [39514, 43147] XerC HTH_17 group_II_RT_mat RVT-CRISPR-like RVT_N ParD Feature: gene Location: 39514-40710 bp Feature: domain Description: XerC Location: 39769-40609 bp Feature: domain Description: XerC Location: 3 9769-40609 bp Feature: gene Location: 40685-41119 bp Feature: domain Description: HTH_17 Location: 40805-40943 bp Feature: domain Description: HTH_17 Location: 40805-40943 bp Feature: gene Location: 41161-42270 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41368-41485 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 413 68-41485 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 41647-41818 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 41647-41818 bp Feature: gene Location: 42210-42770 bp Feature: RT Description: RVT_N Location: 42351-42462 bp Feature: RT Description: RVT_N Location: 423 51-42462 bp Feature: gene Location: 42935-43147 bp Feature: domain Description: ParD Location: 42941-43118 bp Feature: domain Description: ParD Location: 42941-43 118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_17 (pfam12728), group_II_RT_mat (TIGR04416), RVT-CRISPR, RVT_N (pfam13655), ParD (pfam09386)