myRT

myRT report for GCA_009601435.1_ASM960143v1

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Seq: WISY01000012.1 Sinorhizobium meliloti strain USDA1021 contig_12, whole genome shotgun sequence (23407 bp)
Overview 1 RT 1: 20585-23384 bp Neighborhood of RT #1 [20585, 23392] PRK12687 PRK12687 GIIM RVT-GII Feature: gene Location: 20585-21772 bp Feature: domain Description: PRK12687 Location: 20588-21194 bp Feature: domain Description: PRK1 2687 Location: 20588-21 1 94 bp Feature: domain Description: PRK12687 Location: 21443-21767 bp Feature: domain Description: PRK1 2687 Location: 21 443-21 767 bp Feature: gene Location: 22031-22480 bp Feature: domain Description: GIIM Note: maturase Location: 22115-22331 bp Feature: domain Description: GIIM Note: maturase Location: 221 1 5-22331 bp Feature: gene Location: 22526-23392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22853-23384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22853-23384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12687 (flagellin; Reviewed), GIIM (pfam08388), RVT-GII

Seq: WISY01000221.1 Sinorhizobium meliloti strain USDA1021 contig_221, whole genome shotgun sequence (233974 bp)
Overview 1 RT 1: 231511-233971 bp Neighborhood of RT #1 [231511, 233973] PRK12687 PRK12687 RVT-GII Feature: gene Location: 231511-232668 bp Feature: domain Description: PRK12687 Location: 231514-232081 bp Feature: domain Description: PRK12 687 Location: 2 31514-2 32 081 bp Feature: domain Description: PRK12687 Location: 232336-232666 bp Feature: domain Description: PRK12 687 Location: 2 32 336-2 32 666 bp Feature: gene Location: 232694-232915 bp Feature: gene Location: 233146-233973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233473-233971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 33473-2 33971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12687 (flagellin; Reviewed), RVT-GII

Seq: WISY01000225.1 Sinorhizobium meliloti strain USDA1021 contig_225, whole genome shotgun sequence (16257 bp)
Overview 1 RT 1: 2-2535 bp Neighborhood of RT #1 [2, 2651] RVT-GII AraJ HTH_ARSR Feature: gene Location: 2-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 29-827 bp Feature: gene Location: 1006-2190 bp Feature: domain Description: AraJ Location: 1009-2167 bp Feature: domain Description: AraJ Location: 1009-2167 bp Feature: gene Location: 2280-2651 bp Feature: domain Description: HTH_ARSR Location: 2337-2535 bp Feature: domain Description: HTH_ARSR Location: 23 3 7-253 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraJ (COG2814), HTH_ARSR (smart00418), RVT-GII

Seq: WISY01000226.1 Sinorhizobium meliloti strain USDA1021 contig_226, whole genome shotgun sequence (11656 bp)
Overview 1 RT 1: 2-1911 bp Neighborhood of RT #1 [2, 1911] RVT-GII Feature: gene Location: 2-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-827 bp Feature: gene Location: 1031-1363 bp Feature: gene Location: 1609-1911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WISY01000058.1 Sinorhizobium meliloti strain USDA1021 contig_58, whole genome shotgun sequence (5472 bp)
Overview 1 RT 1: 158-5471 bp Neighborhood of RT #1 [158, 5471] Transposase_mut Transposase_mut RVT-GII ZapB DDE_Tnp_IS66 DDE_Tnp_IS66 Feature: gene Location: 158-454 bp Feature: domain Description: Transposase_mut Location: 167-392 bp Feature: domain Description: Transposase_mut Location: 167-392 bp Feature: gene Location: 436-1359 bp Feature: domain Description: Transposase_mut Location: 445-1273 bp Feature: domain Description: Transposase_mut Location: 445 -1273 bp Feature: gene Location: 1818-3227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172-2859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172-285 9 bp Feature: gene Location: 3368-5035 bp Feature: domain Description: ZapB Location: 3437-3587 bp Feature: domain Description: ZapB Location: 3437-35 87 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3902-4127 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3902-4127 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4475-4886 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4475 -4886 bp Feature: gene Location: 5037-5471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, ZapB (pfam06005), DDE_Tnp_IS66 (pfam03050)