myRT

myRT report for GCA_009601485.1_ASM960148v1

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Seq: WISG01000125.1 Sinorhizobium meliloti strain M162 contig_126, whole genome shotgun sequence (7127 bp)
Overview 1 RT 1: 131-6078 bp Neighborhood of RT #1 [131, 6086] DadA RVT-GII rve RVT-GII KOG0730 ParE Feature: gene Location: 131-769 bp Feature: domain Description: DadA Location: 152-722 bp Feature: domain Description: DadA Location: 1 52-722 bp Feature: gene Location: 962-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1 1 75 bp Feature: gene Location: 1575-2516 bp Feature: domain Description: rve Location: 1968-2322 bp Feature: domain Description: rve Location: 1 968-2322 bp Feature: gene Location: 2709-3425 bp Feature: gene Location: 3360-4520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366-4053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366-4053 bp Feature: gene Location: 4817-5383 bp Feature: domain Description: KOG0730 Location: 4826-5342 bp Feature: domain Description: KOG0730 Location: 4826-5342 bp Feature: gene Location: 5790-6086 bp Feature: domain Description: ParE Location: 5799-6078 bp Feature: domain Description: ParE Location: 5799-6078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DadA (COG0665), RVT-GII, rve (pfam00665), KOG0730 (KOG0730, AAA+-type ATPase ), ParE (COG3668)

Seq: WISG01000126.1 Sinorhizobium meliloti strain M162 contig_127, whole genome shotgun sequence (7454 bp)
Overview 1 RT 1: 131-6380 bp Neighborhood of RT #1 [131, 6448] DadA RVT-GII rve RVT-GII COG5659 COG5659 LysR Feature: gene Location: 131-769 bp Feature: domain Description: DadA Location: 152-722 bp Feature: domain Description: DadA Location: 152 -72 2 bp Feature: gene Location: 962-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1175 bp Feature: gene Location: 1575-2516 bp Feature: domain Description: rve Location: 1968-2322 bp Feature: domain Description: rve Location: 1968-2 32 2 bp Feature: gene Location: 2709-3425 bp Feature: gene Location: 3360-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366-4053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366-4053 bp Feature: domain Description: COG5659 Location: 4581-4857 bp Feature: domain Description: COG5659 Location: 4581-4857 bp Feature: gene Location: 5014-5175 bp Feature: domain Description: COG5659 Location: 5044-5122 bp Feature: domain Description: COG5659 Location: 5044-512 2 bp Feature: gene Location: 5498-6448 bp Feature: domain Description: LysR Location: 5522-6380 bp Feature: domain Description: LysR Location: 552 2 -6380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DadA (COG0665), RVT-GII, rve (pfam00665), COG5659 (SRSO17 transposase ), LysR (COG0583)

Seq: WISG01000135.1 Sinorhizobium meliloti strain M162 contig_136, whole genome shotgun sequence (15577 bp)
Overview 1 RT 1: 2679-7197 bp Neighborhood of RT #1 [2679, 7283] INT_RitC_C_like RVT-GII DUF772 DDE_Tnp_1 Transposase_mut Feature: gene Location: 2679-3083 bp Feature: gene Location: 3077-3502 bp Feature: domain Description: INT_RitC_C_like Location: 3083-3428 bp Feature: domain Description: INT_RitC_C_like Location: 3 083 -3 428 bp Feature: gene Location: 3753-5162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4107-4794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4107-4794 bp Feature: gene Location: 5170-5343 bp Feature: gene Location: 5622-7283 bp Feature: domain Description: DUF772 Location: 5781-6000 bp Feature: domain Description: DUF772 Location: 5781-6000 bp Feature: domain Description: DDE_Tnp_1 Location: 6219-6474 bp Feature: domain Description: DDE_Tnp_1 Location: 6219-6474 bp Feature: domain Description: Transposase_mut Location: 6828-7197 bp Feature: domain Description: Transposase_mut Location: 6828-7197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), RVT-GII, DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), Transposase_mut (pfam00872)

Seq: WISG01000154.1 Sinorhizobium meliloti strain M162 contig_155, whole genome shotgun sequence (15856 bp)
Overview 1 RT 1: 13606-15854 bp Neighborhood of RT #1 [13606, 15853] HTH_ARSR AraJ RVT-GII Feature: gene Location: 13606-13977 bp Feature: domain Description: HTH_ARSR Location: 13663-13861 bp Feature: domain Description: HTH_ARSR Location: 13663-13861 bp Feature: gene Location: 14067-15251 bp Feature: domain Description: AraJ Location: 14070-15228 bp Feature: domain Description: AraJ Location: 14 070-15228 bp Feature: gene Location: 15428-15853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15755-15854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15755-15854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), AraJ (COG2814), RVT-GII

Seq: WISG01000175.1 Sinorhizobium meliloti strain M162 contig_176, whole genome shotgun sequence (64649 bp)
Overview 1 RT 1: 1-1507 bp Neighborhood of RT #1 [1, 1507] RVT-GII Feature: gene Location: 1-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-430 bp Feature: gene Location: 630-869 bp Feature: gene Location: 1205-1507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WISG01000178.1 Sinorhizobium meliloti strain M162 contig_179, whole genome shotgun sequence (1463 bp)
Overview 1 RT 1: 46-1377 bp Neighborhood of RT #1 [46, 1406] RVT-GII GIIM RVT-GII Feature: gene Location: 46-753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-334 bp Feature: domain Description: GIIM Note: maturase Location: 388-604 bp Feature: domain Description: GIIM Note: maturase Location: 388-6 04 bp Feature: gene Location: 828-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WISG01000179.1 Sinorhizobium meliloti strain M162 contig_180, whole genome shotgun sequence (1464 bp)
Overview 1 RT 1: 46-1258 bp Neighborhood of RT #1 [46, 1407] RVT-GII GIIM Feature: gene Location: 46-1407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 3-988 bp Feature: domain Description: GIIM Note: maturase Location: 1042-1258 bp Feature: domain Description: GIIM Note: maturase Location: 1042-1258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WISG01000180.1 Sinorhizobium meliloti strain M162 contig_181, whole genome shotgun sequence (96545 bp)
Overview 1 RT 1: 1-1451 bp Neighborhood of RT #1 [1, 1459] RVT-GII GIIM MazF DUF3018 Feature: gene Location: 1-819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-400 bp Feature: domain Description: GIIM Note: maturase Location: 454-670 bp Feature: domain Description: GIIM Note: maturase Location: 454-670 bp Feature: gene Location: 1119-1322 bp Feature: domain Description: MazF Location: 1122-1233 bp Feature: domain Description: MazF Location: 1122-1233 bp Feature: gene Location: 1319-1459 bp Feature: domain Description: DUF3018 Location: 1322-1451 bp Feature: domain Description: DUF3018 Location: 1322-1451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), DUF3018 (pfam11455)

Seq: WISG01000020.1 Sinorhizobium meliloti strain M162 contig_21, whole genome shotgun sequence (6669 bp)
Overview 1 RT 1: 2870-6517 bp Neighborhood of RT #1 [2870, 6666] hutH PRK09356 RVT-GII GIIM Feature: gene Location: 2870-4405 bp Feature: domain Description: hutH Location: 2879-4394 bp Feature: domain Description: hutH Location: 2879 -439 4 bp Feature: gene Location: 4402-5772 bp Feature: domain Description: PRK09356 Location: 4561-5764 bp Feature: domain Description: PRK09 356 Location: 4561-5764 bp Feature: gene Location: 5851-6666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5854-6247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5854-6247 bp Feature: domain Description: GIIM Note: maturase Location: 6301-6517 bp Feature: domain Description: GIIM Note: maturase Location: 6301-6517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388)

Seq: WISG01000216.1 Sinorhizobium meliloti strain M162 contig_217, whole genome shotgun sequence (55483 bp)
Overview 1 RT 1: 1425-5132 bp Neighborhood of RT #1 [1425, 5140] TnpB_IS66 InsE RVT-GII COG4333 Feature: gene Location: 1425-1778 bp Feature: domain Description: TnpB_IS66 Location: 1452-1740 bp Feature: domain Description: TnpB_IS66 Location: 1452-1740 bp Feature: gene Location: 1759-2217 bp Feature: domain Description: InsE Location: 1804-1978 bp Feature: domain Description: InsE Location: 1804-1978 bp Feature: gene Location: 2330-4153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068-3758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3068-3758 bp Feature: gene Location: 4262-4480 bp Feature: gene Location: 4631-5140 bp Feature: domain Description: COG4333 Location: 4634-5132 bp Feature: domain Description: COG4333 Location: 4634-5132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII, COG4333 (Uncharacterized protein )