myRT

myRT report for GCA_009601515.1_ASM960151v1

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Seq: WITA01000184.1 Sinorhizobium fredii strain USDA207 contig_184, whole genome shotgun sequence (45642 bp)
Overview 1 RT 1: 39594-43198 bp Neighborhood of RT #1 [39594, 43227] XerC HTH_17 group_II_RT_mat RVT-CRISPR-like RVT_N ParD Feature: gene Location: 39594-40790 bp Feature: domain Description: XerC Location: 39849-40689 bp Feature: domain Description: XerC Location: 39849-40689 bp Feature: gene Location: 40765-41199 bp Feature: domain Description: HTH_17 Location: 40885-41023 bp Feature: domain Description: HTH_1 7 Location: 40885-41 023 bp Feature: gene Location: 41241-42350 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41448-41565 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 41 448-41 565 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 41727-41898 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 41 727-41 898 bp Feature: gene Location: 42290-42850 bp Feature: RT Description: RVT_N Location: 42431-42542 bp Feature: RT Description: RVT_N Location: 42431 -42542 bp Feature: gene Location: 43015-43227 bp Feature: domain Description: ParD Location: 43021-43198 bp Feature: domain Description: ParD Location: 43021 -431 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_17 (pfam12728), group_II_RT_mat (TIGR04416), RVT-CRISPR, RVT_N (pfam13655), ParD (pfam09386)

Seq: WITA01000098.1 Sinorhizobium fredii strain USDA207 contig_98, whole genome shotgun sequence (8635 bp)
Overview 1 RT 1: 2176-6966 bp Neighborhood of RT #1 [2176, 7091] COG4644 RVT-GII RVT-GII HTH_21 HTH_Tnp_1 Feature: gene Location: 2176-2505 bp Feature: domain Description: COG4644 Location: 2191-2500 bp Feature: domain Description: COG4644 Location: 2 191-2 500 bp Feature: gene Location: 2506-3351 bp Feature: gene Location: 3357-4127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-3972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363-3972 bp Feature: gene Location: 4415-4588 bp Feature: gene Location: 4920-6245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5175-5865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5175-5865 bp Feature: gene Location: 6436-6669 bp Feature: domain Description: HTH_21 Location: 6445-6550 bp Feature: domain Description: HTH_2 1 Location: 6445-6550 bp Feature: gene Location: 6741-7091 bp Feature: domain Description: HTH_Tnp_1 Location: 6744-6966 bp Feature: domain Description: HTH_Tnp_1 Location: 6744-6966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4644 (Transposase and inactivated derivatives, TnpA family ), RVT-GII, HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527)