myRT

myRT report for GCA_009601625.1_ASM960162v1

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Seq: WIST01000108.1 Sinorhizobium meliloti strain Rm41 contig_108, whole genome shotgun sequence (114398 bp)
Overview 1 RT 1: 47121-51170 bp Neighborhood of RT #1 [47121, 51170] fabG MazF RVT-GII GIIM Feature: gene Location: 47121-47903 bp Feature: domain Description: fabG Location: 47133-47889 bp Feature: domain Description: fabG Location: 471 33-47889 bp Feature: gene Location: 48222-48425 bp Feature: domain Description: MazF Location: 48225-48336 bp Feature: domain Description: MazF Location: 48225-48336 bp Feature: gene Location: 48729-50003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48969-49584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48969-49584 bp Feature: domain Description: GIIM Note: maturase Location: 49638-49854 bp Feature: domain Description: GIIM Note: maturase Location: 49638-49854 bp Feature: gene Location: 50290-50529 bp Feature: gene Location: 50868-51170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fabG (PRK12825), MazF (COG2337), RVT-GII, GIIM (pfam08388)

Seq: WIST01000138.1 Sinorhizobium meliloti strain Rm41 contig_138, whole genome shotgun sequence (87712 bp)
Overview 1 RT 1: 20311-24484 bp Neighborhood of RT #1 [20311, 24484] PRK13347 RVT-GII GIIM Feature: gene Location: 20311-20586 bp Feature: gene Location: 20585-21937 bp Feature: domain Description: PRK13347 Location: 20603-21932 bp Feature: domain Description: PRK13347 Location: 2 0603-2 1932 bp Feature: gene Location: 22043-23317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22283-22898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 83-2 2 898 bp Feature: domain Description: GIIM Note: maturase Location: 22952-23168 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 952 -2 3168 bp Feature: gene Location: 23604-23843 bp Feature: gene Location: 24182-24484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13347 (coproporphyrinogen III oxidase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: WIST01000176.1 Sinorhizobium meliloti strain Rm41 contig_176, whole genome shotgun sequence (156333 bp)
Overview 1 RT 1: 63229-68641 bp Neighborhood of RT #1 [63229, 68652] RVT-GII GIIM PRK09356 hutH Feature: gene Location: 63229-63531 bp Feature: gene Location: 63870-64133 bp Feature: gene Location: 64369-65670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64636-65251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6463 6-65251 bp Feature: domain Description: GIIM Note: maturase Location: 65305-65521 bp Feature: domain Description: GIIM Note: maturase Location: 653 05-65521 bp Feature: gene Location: 65750-67120 bp Feature: domain Description: PRK09356 Location: 65909-67112 bp Feature: domain Description: PRK093 56 Location: 65909-67112 bp Feature: gene Location: 67117-68652 bp Feature: domain Description: hutH Location: 67126-68641 bp Feature: domain Description: hutH Location: 67126-68641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225)

Seq: WIST01000187.1 Sinorhizobium meliloti strain Rm41 contig_187, whole genome shotgun sequence (144527 bp)
Overview 1 RT 1: 141570-144433 bp Neighborhood of RT #1 [141570, 144525] AraJ RVT-GII GIIM Feature: gene Location: 141570-142754 bp Feature: domain Description: AraJ Location: 141573-142731 bp Feature: domain Description: AraJ Location: 14 1573-14 2731 bp Feature: gene Location: 142702-142992 bp Feature: gene Location: 143308-144525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143548-144163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 354 8-14 4 163 bp Feature: domain Description: GIIM Note: maturase Location: 144217-144433 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 217-14 4 4 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraJ (COG2814), RVT-GII, GIIM (pfam08388)

Seq: WIST01000027.1 Sinorhizobium meliloti strain Rm41 contig_27, whole genome shotgun sequence (125815 bp)
Overview 1 RT 1: 110580-114277 bp 2 RT 2: 121518-125168 bp Neighborhood of RT #1 [110580, 114277] COG3415 RVT-GII GIIM DDE_3 Neighborhood of RT #2 [121518, 125812] Transposase_mut RVT-GII Beta_helix Feature: gene Location: 110580-110786 bp Feature: gene Location: 110993-111379 bp Feature: domain Description: COG3415 Location: 111002-111350 bp Feature: domain Description: COG3415 Location: 111002-11135 0 bp Feature: gene Location: 111995-113254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112211-112865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112211-112865 bp Feature: domain Description: GIIM Note: maturase Location: 112946-113168 bp Feature: domain Description: GIIM Note: maturase Location: 112946-113168 bp Feature: gene Location: 113308-113823 bp Feature: domain Description: DDE_3 Location: 113338-113737 bp Feature: domain Description: DDE_3 Location: 113338-113737 bp Feature: gene Location: 114050-114277 bp Feature: gene Location: 121518-121856 bp Feature: gene Location: 121717-121953 bp Feature: domain Description: Transposase_mut Location: 121720-121912 bp Feature: domain Description: Transposase_mut Location: 121720-121912 bp Feature: gene Location: 122464-123873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122818-123505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122818-1235 05 bp Feature: gene Location: 124529-125812 bp Feature: domain Description: Beta_helix Location: 124616-125168 bp Feature: domain Description: Beta_helix Location: 124616-125 168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), Transposase_mut (pfam00872), Beta_helix (pfam13229)

Seq: WIST01000052.1 Sinorhizobium meliloti strain Rm41 contig_52, whole genome shotgun sequence (105607 bp)
Overview 1 RT 1: 99-3486 bp Neighborhood of RT #1 [99, 3486] RVT-CRISPR-like2 ParD Feature: gene Location: 99-518 bp Feature: gene Location: 532-843 bp Feature: gene Location: 1178-2473 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 1544-2126 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 1544-2126 bp Feature: gene Location: 2707-2937 bp Feature: domain Description: ParD Location: 2728-2902 bp Feature: domain Description: ParD Location: 2728-2902 bp Feature: gene Location: 2977-3486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, ParD (pfam09386)

Seq: WIST01000060.1 Sinorhizobium meliloti strain Rm41 contig_60, whole genome shotgun sequence (57249 bp)
Overview 1 RT 1: 3-3640 bp Neighborhood of RT #1 [3, 3645] RVT-GII GIIM NorD Feature: gene Location: 3-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-858 bp Feature: domain Description: GIIM Note: maturase Location: 912-1128 bp Feature: domain Description: GIIM Note: maturase Location: 912-1128 bp Feature: gene Location: 1536-1706 bp Feature: gene Location: 1750-3645 bp Feature: domain Description: NorD Location: 1753-3640 bp Feature: domain Description: NorD Location: 17 53-3640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NorD (COG4548)

Seq: WIST01000092.1 Sinorhizobium meliloti strain Rm41 contig_92, whole genome shotgun sequence (18620 bp)
Overview 1 RT 1: 8588-17135 bp Neighborhood of RT #1 [8588, 17743] YegI SH3_3 RVT-UG5 HATPase_c_3 COG4584 Feature: gene Location: 8588-10504 bp Feature: domain Description: YegI Location: 8609-10466 bp Feature: domain Description: YegI Location: 8 609-10466 bp Feature: gene Location: 10508-11170 bp Feature: domain Description: SH3_3 Location: 11000-11153 bp Feature: domain Description: SH3_3 Location: 11000-11153 bp Feature: gene Location: 11254-14271 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11749-12220 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11749-12220 bp Feature: gene Location: 14599-16050 bp Feature: domain Description: HATPase_c_3 Location: 14674-14998 bp Feature: domain Description: HATPase_c_3 Location: 14674-14998 bp Feature: gene Location: 16193-17743 bp Feature: domain Description: COG4584 Location: 16286-17135 bp Feature: domain Description: COG458 4 Location: 1628 6-17135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YegI (COG4248), SH3_3 (pfam08239), RVT-UG5, HATPase_c_3 (pfam13589), COG4584 (Transposase )