myRT

myRT report for GCA_009601655.1_ASM960165v1

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Seq: WISK01000056.1 Sinorhizobium medicae strain M22 contig_56, whole genome shotgun sequence (10876 bp)
Overview 1 RT 1: 8057-10871 bp Neighborhood of RT #1 [8057, 10873] COG3547 RVT-GII COG5659 Feature: gene Location: 8057-8542 bp Feature: domain Description: COG3547 Location: 8060-8492 bp Feature: domain Description: COG3547 Location: 8060-8492 bp Feature: gene Location: 8968-9132 bp Feature: gene Location: 9140-9583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9143-9308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 43-9308 bp Feature: gene Location: 9812-10873 bp Feature: domain Description: COG5659 Location: 9821-10871 bp Feature: domain Description: COG5659 Location: 9821 -1 0871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, COG5659 (SRSO17 transposase )

Seq: WISK01000071.1 Sinorhizobium medicae strain M22 contig_71, whole genome shotgun sequence (7210 bp)
Overview 1 RT 1: 4161-7019 bp Neighborhood of RT #1 [4161, 7019] COG3547 DDE_3 RVT-GII GIIM RVT-GII Feature: gene Location: 4161-4610 bp Feature: domain Description: COG3547 Location: 4170-4503 bp Feature: domain Description: COG3547 Location: 4170-4503 bp Feature: gene Location: 4783-5208 bp Feature: domain Description: DDE_3 Location: 4789-5101 bp Feature: domain Description: DDE_3 Location: 4789-5101 bp Feature: gene Location: 5305-5865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5308-5476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5308-5476 bp Feature: domain Description: GIIM Note: maturase Location: 5557-5773 bp Feature: domain Description: GIIM Note: maturase Location: 5557-5773 bp Feature: gene Location: 5900-6565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6116-6560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6116-6560 bp Feature: gene Location: 6540-7019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: WISK01000073.1 Sinorhizobium medicae strain M22 contig_73, whole genome shotgun sequence (22166 bp)
Overview 1 RT 1: 3643-12475 bp Neighborhood of RT #1 [3643, 12489] RVT-UG20 TPR TPR CHAT DNA2 Feature: gene Location: 3643-5532 bp Feature: gene Location: 5962-6432 bp Feature: gene Location: 6505-8118 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 6853-7351 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 6853 -73 51 bp Feature: gene Location: 8333-12121 bp Feature: domain Description: TPR Location: 9116-9431 bp Feature: domain Description: TPR Location: 9116-943 1 bp Feature: domain Description: TPR Location: 10232-10421 bp Feature: domain Description: TPR Location: 1023 2-10421 bp Feature: domain Description: CHAT Location: 11375-12029 bp Feature: domain Description: CHAT Location: 113 75-12029 bp Feature: gene Location: 12274-12489 bp Feature: domain Description: DNA2 Location: 12295-12475 bp Feature: domain Description: DNA2 Location: 12295-12475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20, TPR (smart00028), CHAT (pfam12770), DNA2 (COG1112)

Seq: WISK01000009.1 Sinorhizobium medicae strain M22 contig_9, whole genome shotgun sequence (19194 bp)
Overview 1 RT 1: 15139-19062 bp Neighborhood of RT #1 [15139, 19112] DUF772 DDE_Tnp_1_6 Transposase_mut RVT-GII GIIM DDE_3 HTH_29 HTH_33 Feature: gene Location: 15139-16536 bp Feature: domain Description: DUF772 Location: 15298-15517 bp Feature: domain Description: DUF772 Location: 15298-15517 bp Feature: domain Description: DDE_Tnp_1_6 Location: 16063-16417 bp Feature: domain Description: DDE_Tnp_1_6 Location: 16063-164 17 bp Feature: gene Location: 16619-16816 bp Feature: domain Description: Transposase_mut Location: 16625-16808 bp Feature: domain Description: Transposase_mut Location: 16625-16808 bp Feature: gene Location: 16946-18124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17036-17672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17036-17672 bp Feature: domain Description: GIIM Note: maturase Location: 17741-18011 bp Feature: domain Description: GIIM Note: maturase Location: 1774 1-18011 bp Feature: gene Location: 18052-18375 bp Feature: domain Description: DDE_3 Location: 18064-18283 bp Feature: domain Description: DDE_3 Location: 18064 -18283 bp Feature: gene Location: 18567-19112 bp Feature: domain Description: HTH_29 Location: 18660-18840 bp Feature: domain Description: HTH_29 Location: 18660-1884 0 bp Feature: domain Description: HTH_33 Location: 18891-19062 bp Feature: domain Description: HTH_33 Location: 18891-19062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), HTH_29 (pfam13551), HTH_33 (pfam13592)

Seq: WISK01000096.1 Sinorhizobium medicae strain M22 contig_96, whole genome shotgun sequence (2531 bp)
Overview 1 RT 1: 1-2422 bp Neighborhood of RT #1 [1, 2514] IS285 RVT-GII HTH_29 HTH_33 DDE_3 Feature: gene Location: 1-198 bp Feature: domain Description: IS285 Location: 22-196 bp Feature: domain Description: IS285 Location: 22-196 bp Feature: gene Location: 942-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245 -1374 bp Feature: gene Location: 1454-1999 bp Feature: domain Description: HTH_29 Location: 1547-1727 bp Feature: domain Description: HTH_29 Location: 15 47-1727 bp Feature: domain Description: HTH_33 Location: 1778-1949 bp Feature: domain Description: HTH_33 Location: 1778-1949 bp Feature: gene Location: 2191-2514 bp Feature: domain Description: DDE_3 Location: 2203-2422 bp Feature: domain Description: DDE_3 Location: 2203-2422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)