myRT

myRT report for GCA_009646075.1_ASM964607v1

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Seq: WAGY01000262.1 Escherichia coli strain 102 NODE_262_length_3155_cov_66.9585, whole genome shotgun sequence (3155 bp)
Overview 1 RT 1: 1-3149 bp Neighborhood of RT #1 [1, 3154] DDE_Tnp_IS66_C RVT-GII GIIM PinE Feature: gene Location: 1-189 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 58-166 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 58-1 66 bp Feature: gene Location: 780-2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 01 -1 71 9 bp Feature: domain Description: GIIM Note: maturase Location: 1767-1998 bp Feature: domain Description: GIIM Note: maturase Location: 1 767-1 998 bp Feature: gene Location: 2342-2743 bp Feature: gene Location: 2843-3154 bp Feature: domain Description: PinE Location: 2861-3149 bp Feature: domain Description: PinE Location: 2861 -31 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388)

Seq: WAGY01000312.1 Escherichia coli strain 102 NODE_312_length_1528_cov_58.5607, whole genome shotgun sequence (1528 bp)
Overview 1 RT 1: 125-1226 bp Neighborhood of RT #1 [125, 1471] RVT-GII GIIM Feature: gene Location: 125-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 1-953 bp Feature: domain Description: GIIM Note: maturase Location: 1028-1226 bp Feature: domain Description: GIIM Note: maturase Location: 102 8-12 2 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WAGY01000056.1 Escherichia coli strain 102 NODE_56_length_28308_cov_34.0251, whole genome shotgun sequence (28308 bp)
Overview 1 RT 1: 16376-21422 bp Neighborhood of RT #1 [16376, 21598] proA RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 16376-17629 bp Feature: domain Description: proA Location: 16403-17594 bp Feature: domain Description: proA Location: 16403 -17594 bp Feature: gene Location: 17759-17899 bp Feature: gene Location: 18271-19209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18370-18967 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183 70-18967 bp Feature: gene Location: 19210-20838 bp Feature: domain Description: COG3950 Location: 19393-20572 bp Feature: domain Description: COG3 950 Location: 193 93 -20572 bp Feature: gene Location: 20822-21598 bp Feature: domain Description: TIGR02646 Location: 20894-21422 bp Feature: domain Description: TIGR02646 Location: 20894-21422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)