myRT

myRT report for GCA_009646525.1_ASM964652v1

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Seq: WJCG01000101.1 Bacillus thuringiensis strain 4Q4 NODE_108_length_926_cov_0.440518, whole genome shotgun sequence (926 bp)
Overview 1 RT 1: 2-588 bp Neighborhood of RT #1 [2, 704] RVT-UNC RT_nLTR_like Feature: gene Location: 2-172 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23-128 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23-1 28 bp Feature: gene Location: 378-704 bp Feature: domain Description: RT_nLTR_like Location: 387-588 bp Feature: domain Description: RT_nLTR_like Location: 387-588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28/RVT-GII/RVT-DGRs(RVT-UNC), RT_nLTR_like (cd01650)

Seq: WJCG01000021.1 Bacillus thuringiensis strain 4Q4 NODE_21_length_97934_cov_58.572611, whole genome shotgun sequence (97934 bp)
Overview 1 RT 1: 17270-23054 bp Neighborhood of RT #1 [17270, 23149] Spr RVT-GII Intron_maturas2 HNHc Lysozyme_like TraC-F-type TraC-F-type Feature: gene Location: 17270-17542 bp Feature: gene Location: 17563-18039 bp Feature: domain Description: Spr Location: 17641-18016 bp Feature: domain Description: Spr Location: 17641-18016 bp Feature: gene Location: 18151-19974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18415-19249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18415-192 49 bp Feature: domain Description: Intron_maturas2 Location: 19321-19624 bp Feature: domain Description: Intron_maturas2 Location: 1932 1-1962 4 bp Feature: domain Description: HNHc Note: nucleases Location: 19795-19948 bp Feature: domain Description: HNHc Note: nucleases Location: 19795-19948 bp Feature: gene Location: 20545-21207 bp Feature: domain Description: Lysozyme_like Location: 20734-21196 bp Feature: domain Description: Lysozyme_like Location: 2 0734-2 1196 bp Feature: gene Location: 21212-23149 bp Feature: domain Description: TraC-F-type Location: 21929-22163 bp Feature: domain Description: TraC-F-type Location: 2 192 9-2 2 163 bp Feature: domain Description: TraC-F-type Location: 22733-23054 bp Feature: domain Description: TraC-F-type Location: 2 2 733-2 3054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Lysozyme_like (pfam13702), TraC-F-type (TIGR02746)

Seq: WJCG01000677.1 Bacillus thuringiensis strain 4Q4 NODE_3089_length_234_cov_0.605096, whole genome shotgun sequence (234 bp)
Overview 1 RT 1: 58-136 bp Neighborhood of RT #1 [58, 192] RVT-G2L4 Feature: gene Location: 58-192 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 70-136 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 70-13 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4

Seq: WJCG01000273.1 Bacillus thuringiensis strain 4Q4 NODE_389_length_298_cov_0.791855, whole genome shotgun sequence (298 bp)
Overview 1 RT 1: 95-281 bp Neighborhood of RT #1 [95, 295] RVT-UG28 Feature: gene Location: 95-295 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 131-281 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 131-281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28

Seq: WJCG01000009.1 Bacillus thuringiensis strain 4Q4 NODE_9_length_249133_cov_51.992323, whole genome shotgun sequence (249133 bp)
Overview 1 RT 1: 139230-145828 bp Neighborhood of RT #1 [139230, 145866] ligA RVT-Retrons RVT-GII GIIM YpsA Macro_Poa1p_like Feature: gene Location: 139230-139469 bp Feature: gene Location: 139531-141501 bp Feature: domain Description: ligA Location: 139546-141496 bp Feature: domain Description: ligA Location: 1395 46-141496 bp Feature: gene Location: 141890-142588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142097-142565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142097-1425 65 bp Feature: gene Location: 143111-144373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143315-143972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143315 -143972 bp Feature: domain Description: GIIM Note: maturase Location: 144053-144281 bp Feature: domain Description: GIIM Note: maturase Location: 14405 3-144281 bp Feature: gene Location: 144431-144820 bp Feature: gene Location: 144880-145866 bp Feature: domain Description: YpsA Location: 144901-145375 bp Feature: domain Description: YpsA Location: 144901-145 375 bp Feature: domain Description: Macro_Poa1p_like Location: 145393-145828 bp Feature: domain Description: Macro_Poa1p_like Location: 145 393-145 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligA (PRK14351), RVT-Retrons, RVT-GII, GIIM (pfam08388), YpsA, Macro_Poa1p_like