myRT

myRT report for GCA_009647255.1_ASM964725v1

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Seq: WJDR01000103.1 Bacillus thuringiensis strain 4A2 NODE_103_length_2695_cov_157.484339, whole genome shotgun sequence (2695 bp)
Overview 1 RT 1: 319-2463 bp Neighborhood of RT #1 [319, 2579] RVT-GII HNHc Feature: gene Location: 319-453 bp Feature: gene Location: 747-2579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 047-1 752 bp Feature: domain Description: HNHc Note: nucleases Location: 2331-2463 bp Feature: domain Description: HNHc Note: nucleases Location: 2331 -2463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WJDR01000104.1 Bacillus thuringiensis strain 4A2 NODE_104_length_2684_cov_304.726506, whole genome shotgun sequence (2684 bp)
Overview 1 RT 1: 116-2390 bp Neighborhood of RT #1 [116, 2390] RVT-GII HNHc Feature: gene Location: 116-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-112 1 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1832 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1832 bp Feature: gene Location: 2232-2390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WJDR01000105.1 Bacillus thuringiensis strain 4A2 NODE_105_length_2681_cov_115.864823, whole genome shotgun sequence (2681 bp)
Overview 1 RT 1: 95-2421 bp Neighborhood of RT #1 [95, 2421] RVT-GII HNHc Feature: gene Location: 95-1891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 -1058 bp Feature: domain Description: HNHc Note: nucleases Location: 1619-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1619-1754 bp Feature: gene Location: 2203-2421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WJDR01000106.1 Bacillus thuringiensis strain 4A2 NODE_106_length_2607_cov_196.587352, whole genome shotgun sequence (2607 bp)
Overview 1 RT 1: 99-1752 bp Neighborhood of RT #1 [99, 1868] RVT-GII HNHc Feature: gene Location: 99-1868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-1053 bp Feature: domain Description: HNHc Note: nucleases Location: 1614-1752 bp Feature: domain Description: HNHc Note: nucleases Location: 1614 -1752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WJDR01000193.1 Bacillus thuringiensis strain 4A2 NODE_264_length_286_cov_0.641148, whole genome shotgun sequence (286 bp)
Overview 1 RT 1: 2-167 bp Neighborhood of RT #1 [2, 283] RVT-UNC Feature: gene Location: 2-283 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 20-167 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 20-167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-DGRs/RVT-CRISPR/RVT-UG5(RVT-UNC)

Seq: WJDR01000049.1 Bacillus thuringiensis strain 4A2 NODE_49_length_30704_cov_57.253143, whole genome shotgun sequence (30704 bp)
Overview 1 RT 1: 27034-30642 bp Neighborhood of RT #1 [27034, 30653] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like Feature: gene Location: 27034-27903 bp Feature: domain Description: NlpD Location: 27049-27475 bp Feature: domain Description: NlpD Location: 27049-27475 bp Feature: domain Description: Spr Location: 27508-27844 bp Feature: domain Description: Spr Location: 27508-27844 bp Feature: gene Location: 27927-28061 bp Feature: gene Location: 28063-29886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28327-29161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28327-2916 1 bp Feature: domain Description: Intron_maturas2 Location: 29230-29569 bp Feature: domain Description: Intron_maturas2 Location: 29230-2956 9 bp Feature: domain Description: HNHc Note: nucleases Location: 29707-29863 bp Feature: domain Description: HNHc Note: nucleases Location: 29707-2986 3 bp Feature: gene Location: 30462-30653 bp Feature: domain Description: CwlT_like Location: 30489-30642 bp Feature: domain Description: CwlT_like Location: 30489-306 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like

Seq: WJDR01000050.1 Bacillus thuringiensis strain 4A2 NODE_50_length_28427_cov_56.002399, whole genome shotgun sequence (28427 bp)
Overview 1 RT 1: 13512-18419 bp Neighborhood of RT #1 [13512, 18739] DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1 CzcO Feature: gene Location: 13512-14642 bp Feature: domain Description: DDE_Tnp_1 Location: 13929-14397 bp Feature: domain Description: DDE_Tnp_1 Location: 13929-14397 bp Feature: gene Location: 14772-14951 bp Feature: gene Location: 15101-16432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15410-16046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15410-16046 bp Feature: domain Description: GIIM Note: maturase Location: 16124-16349 bp Feature: domain Description: GIIM Note: maturase Location: 16124-16349 bp Feature: gene Location: 16549-16962 bp Feature: domain Description: DDE_Tnp_1 Location: 16585-16687 bp Feature: domain Description: DDE_Tnp_1 Location: 16585-16687 bp Feature: gene Location: 17312-18739 bp Feature: domain Description: CzcO Location: 17414-18419 bp Feature: domain Description: CzcO Location: 17 414-18419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), CzcO (COG2072)

Seq: WJDR01000052.1 Bacillus thuringiensis strain 4A2 NODE_52_length_25869_cov_60.238717, whole genome shotgun sequence (25869 bp)
Overview 1 RT 1: 7849-18357 bp Neighborhood of RT #1 [7849, 18357] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7849-8832 bp Feature: domain Description: rpsA Location: 8116-8653 bp Feature: domain Description: rpsA Location: 8 116-8 653 bp Feature: gene Location: 9091-10857 bp Feature: domain Description: TraG-D_C Location: 9103-9421 bp Feature: domain Description: TraG-D_C Location: 9103-9421 bp Feature: domain Description: Ftsk_gamma Location: 9847-10027 bp Feature: domain Description: Ftsk_gamma Location: 98 47-10027 bp Feature: domain Description: Ftsk_gamma Location: 10180-10324 bp Feature: domain Description: Ftsk_gamma Location: 1018 0-10324 bp Feature: gene Location: 11090-12964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11390-12095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11390-12095 bp Feature: domain Description: GIIM Note: maturase Location: 12209-12377 bp Feature: domain Description: GIIM Note: maturase Location: 12209-12377 bp Feature: domain Description: HNHc Note: nucleases Location: 12725-12890 bp Feature: domain Description: HNHc Note: nucleases Location: 12725-128 90 bp Feature: gene Location: 13637-14158 bp Feature: gene Location: 14297-16120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14567-15395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14567-15395 bp Feature: domain Description: Intron_maturas2 Location: 15467-15785 bp Feature: domain Description: Intron_maturas2 Location: 15467-1578 5 bp Feature: domain Description: HNHc Note: nucleases Location: 15938-16091 bp Feature: domain Description: HNHc Note: nucleases Location: 15938 -16091 bp Feature: gene Location: 16721-17866 bp Feature: gene Location: 17884-18357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Intron_maturas2 (pfam01348)