myRT

myRT report for GCA_009659625.1_ASM965962v1

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Seq: VOIW01000002.1 Pseudomonas haemolytica strain DSM 108987 2_905156_57.2821, whole genome shotgun sequence (905156 bp)
Overview 1 RT 1: 621080-628830 bp 2 RT 2: 686438-692553 bp Neighborhood of RT #1 [621080, 628847] DUF262 GIIM RVT-GII TolC Neighborhood of RT #2 [686438, 692576] PRK14607 TrpE RVT-GII KOG1454 MdoB PLDc_N Feature: gene Location: 621080-623485 bp Feature: domain Description: DUF262 Location: 621113-621800 bp Feature: domain Description: DUF262 Location: 621 1 1 3-621 800 bp Feature: gene Location: 625475-625819 bp Feature: domain Description: GIIM Note: maturase Location: 625481-625652 bp Feature: domain Description: GIIM Note: maturase Location: 625481 -625652 bp Feature: gene Location: 626026-626709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626383-626575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626383-626575 bp Feature: gene Location: 627060-627344 bp Feature: gene Location: 627432-628847 bp Feature: domain Description: TolC Location: 627528-628830 bp Feature: domain Description: TolC Location: 627528-628830 bp Feature: gene Location: 686438-687031 bp Feature: domain Description: PRK14607 Location: 686444-687011 bp Feature: domain Description: PRK1 4607 Location: 686444-68701 1 bp Feature: gene Location: 687028-688503 bp Feature: domain Description: TrpE Location: 687085-688486 bp Feature: domain Description: TrpE Location: 687085-688486 bp Feature: gene Location: 689026-689766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689032-689335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689032-689335 bp Feature: domain Description: KOG1454 Location: 689554-689740 bp Feature: domain Description: KOG1 454 Location: 689554-689740 bp Feature: gene Location: 689887-691974 bp Feature: domain Description: MdoB Location: 689980-691966 bp Feature: domain Description: MdoB Location: 689980-691 966 bp Feature: gene Location: 692385-692576 bp Feature: domain Description: PLDc_N Location: 692430-692553 bp Feature: domain Description: PLDc_N Location: 692430-692553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), GIIM (pfam08388), RVT-GII, TolC (COG1538), PRK14607 (bifunctional anthranilate synthase component II/anthranilate phosphoribosyltransferase), TrpE (COG0147), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), MdoB (COG1368), PLDc_N (pfam13396)

Seq: VOIW01000009.1 Pseudomonas haemolytica strain DSM 108987 9_204221_62.6176, whole genome shotgun sequence (204221 bp)
Overview 1 RT 1: 3-9294 bp Neighborhood of RT #1 [3, 9302] YD_repeat_2x YD_repeat_2x RHS_repeat YD_repeat_2x YD_repeat_2x RhsA RhsA RVT-GII DEAH_box_HrpA AceK Feature: gene Location: 3-743 bp Feature: domain Description: YD_repeat_2x Location: 36-147 bp Feature: domain Description: YD_repeat_2 x Location: 36-147 bp Feature: domain Description: YD_repeat_2x Location: 336-423 bp Feature: domain Description: YD_repeat_2 x Location: 336-42 3 bp Feature: domain Description: RHS_repeat Location: 474-573 bp Feature: domain Description: RHS_repeat Location: 474-573 bp Feature: domain Description: YD_repeat_2x Location: 612-678 bp Feature: domain Description: YD_repeat_2 x Location: 612 -678 bp Feature: domain Description: YD_repeat_2x Location: 696-738 bp Feature: domain Description: YD_repeat_2 x Location: 696-738 bp Feature: gene Location: 840-2327 bp Feature: domain Description: RhsA Location: 852-1080 bp Feature: domain Description: RhsA Location: 852 -1080 bp Feature: domain Description: RhsA Location: 1152-2202 bp Feature: domain Description: RhsA Location: 1152 -2 2 02 bp Feature: gene Location: 3232-3387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3235-3367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 35-3367 bp Feature: gene Location: 3521-7432 bp Feature: domain Description: DEAH_box_HrpA Location: 3557-7418 bp Feature: domain Description: DEAH_box_HrpA Location: 3557-7418 bp Feature: gene Location: 7503-9302 bp Feature: domain Description: AceK Location: 7593-9294 bp Feature: domain Description: AceK Location: 7593-92 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DEAH_box_HrpA (TIGR01967), YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593)