myRT

myRT report for GCA_009663695.1_ASM966369v1

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Seq: RCOH01000103.1 Cupriavidus necator H850 scaffold_102, whole genome shotgun sequence (14660 bp)
Overview 1 RT 1: 1912-5752 bp 2 RT 2: 10984-14643 bp Neighborhood of RT #1 [1912, 5871] RVT_N RVT-GII GIIM COG3547 COG3464 Neighborhood of RT #2 [10984, 14657] Resolvase Recombinase Zn_ribbon_recom RVT-GII IS285 Feature: gene Location: 1912-2259 bp Feature: gene Location: 2342-2470 bp Feature: gene Location: 2528-4135 bp Feature: domain Description: RVT_N Location: 2699-2933 bp Feature: domain Description: RVT_N Location: 2699-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2987-3629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2987-3629 bp Feature: domain Description: GIIM Note: maturase Location: 3680-3914 bp Feature: domain Description: GIIM Note: maturase Location: 3680-391 4 bp Feature: gene Location: 4126-5196 bp Feature: domain Description: COG3547 Location: 4234-5140 bp Feature: domain Description: COG3547 Location: 4234-51 40 bp Feature: gene Location: 5437-5871 bp Feature: domain Description: COG3464 Location: 5521-5752 bp Feature: domain Description: COG3464 Location: 5521 -5752 bp Feature: gene Location: 10984-12927 bp Feature: domain Description: Resolvase Location: 11005-11443 bp Feature: domain Description: Resolvase Location: 1 1 005-1 1 443 bp Feature: domain Description: Recombinase Location: 11539-11899 bp Feature: domain Description: Recombinase Location: 1 1 539-1 1 899 bp Feature: domain Description: Zn_ribbon_recom Location: 11944-12148 bp Feature: domain Description: Zn_ribbon_recom Location: 1 1 944-1 21 48 bp Feature: gene Location: 12924-13106 bp Feature: gene Location: 13222-13443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13225-13417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3225-1 341 7 bp Feature: gene Location: 13548-14657 bp Feature: domain Description: IS285 Location: 13554-14643 bp Feature: domain Description: IS285 Location: 1 3554-1 4643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG3464 (Transposase ), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), IS285 (COG3328)

Seq: RCOH01000129.1 Cupriavidus necator H850 scaffold_128, whole genome shotgun sequence (4032 bp)
Overview 1 RT 1: 3-3977 bp Neighborhood of RT #1 [3, 4030] RVT-GII YkfC Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM DDE_Tnp_ISL3 Feature: gene Location: 3-506 bp Feature: gene Location: 545-1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-860 bp Feature: domain Description: YkfC Location: 860-989 bp Feature: domain Description: YkfC Location: 860-989 bp Feature: gene Location: 1131-1316 bp Feature: gene Location: 1313-3010 bp Feature: domain Description: Resolvase Location: 1334-1775 bp Feature: domain Description: Resolvase Location: 1334-1775 bp Feature: domain Description: Recombinase Location: 1868-2228 bp Feature: domain Description: Recombinase Location: 1868-2 2 2 8 bp Feature: domain Description: Zn_ribbon_recom Location: 2273-2477 bp Feature: domain Description: Zn_ribbon_recom Location: 2 2 73-2 477 bp Feature: gene Location: 3042-3389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051-3264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051-32 64 bp Feature: gene Location: 3396-3650 bp Feature: domain Description: GIIM Note: maturase Location: 3405-3564 bp Feature: domain Description: GIIM Note: maturase Location: 3405-3564 bp Feature: gene Location: 3725-4030 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3734-3977 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3734-3977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610)

Seq: RCOH01000130.1 Cupriavidus necator H850 scaffold_129, whole genome shotgun sequence (3495 bp)
Overview 1 RT 1: 2-3373 bp Neighborhood of RT #1 [2, 3373] RVT-GII RVT-GII GIIM Feature: gene Location: 2-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-1136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-113 6 bp Feature: gene Location: 1452-2756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-23 52 bp Feature: domain Description: GIIM Note: maturase Location: 2448-2664 bp Feature: domain Description: GIIM Note: maturase Location: 2448-2664 bp Feature: gene Location: 3017-3373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RCOH01000192.1 Cupriavidus necator H850 scaffold_191, whole genome shotgun sequence (795 bp)
Overview 1 RT 1: 1-674 bp Neighborhood of RT #1 [1, 793] IS285 RVT-GII Feature: gene Location: 1-429 bp Feature: domain Description: IS285 Location: 91-430 bp Feature: domain Description: IS285 Location: 91-4 30 bp Feature: gene Location: 362-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII

Seq: RCOH01000003.1 Cupriavidus necator H850 scaffold_2, whole genome shotgun sequence (453704 bp)
Overview 1 RT 1: 444934-448457 bp Neighborhood of RT #1 [444934, 448603] COG3795 integrase_gron RVT-GII GIIM MLTF_like Feature: gene Location: 444934-445239 bp Feature: domain Description: COG3795 Location: 444940-445216 bp Feature: domain Description: COG3795 Location: 444940-445 216 bp Feature: gene Location: 445506-445634 bp Feature: domain Description: integrase_gron Location: 445509-445608 bp Feature: domain Description: integrase_gron Location: 445 5 09-445 608 bp Feature: gene Location: 445836-446798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445845-446427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445 845 -446427 bp Feature: domain Description: GIIM Note: maturase Location: 446496-446712 bp Feature: domain Description: GIIM Note: maturase Location: 446496-446712 bp Feature: gene Location: 447136-448293 bp Feature: gene Location: 448322-448603 bp Feature: domain Description: MLTF_like Location: 448343-448457 bp Feature: domain Description: MLTF_like Location: 448343-44845 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3795 (Uncharacterized conserved protein ), integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388), MLTF_like

Seq: RCOH01000023.1 Cupriavidus necator H850 scaffold_22, whole genome shotgun sequence (107745 bp)
Overview 1 RT 1: 55784-62098 bp Neighborhood of RT #1 [55784, 62112] PGDYG ThiD RVT-GII GIIM HNHc AdoHcyase YvlD Feature: gene Location: 55784-56218 bp Feature: domain Description: PGDYG Location: 55904-56204 bp Feature: domain Description: PGDYG Location: 55904-56 204 bp Feature: gene Location: 56224-57051 bp Feature: domain Description: ThiD Location: 56239-57031 bp Feature: domain Description: ThiD Location: 56 239-57031 bp Feature: gene Location: 58643-59965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58646-59234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586 46 -59234 bp Feature: domain Description: GIIM Note: maturase Location: 59288-59519 bp Feature: domain Description: GIIM Note: maturase Location: 59288-59519 bp Feature: domain Description: HNHc Note: nucleases Location: 59741-59903 bp Feature: domain Description: HNHc Note: nucleases Location: 59741-59903 bp Feature: gene Location: 60273-61691 bp Feature: domain Description: AdoHcyase Location: 60312-61686 bp Feature: domain Description: AdoHcyase Location: 6 0312-6 16 86 bp Feature: gene Location: 61762-62112 bp Feature: domain Description: YvlD Location: 61765-62098 bp Feature: domain Description: YvlD Location: 6 176 5-6 2098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGDYG (pfam14083), ThiD (COG0351), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoHcyase (smart00996), YvlD (COG1950)

Seq: RCOH01000063.1 Cupriavidus necator H850 scaffold_62, whole genome shotgun sequence (38150 bp)
Overview 1 RT 1: 34747-38148 bp Neighborhood of RT #1 [34747, 38148] PIN_VapC-like Dimer_Tnp_Tn5 RVT-GII GIIM Feature: gene Location: 34747-35160 bp Feature: domain Description: PIN_VapC-like Location: 34762-35104 bp Feature: domain Description: PIN_VapC-like Location: 347 62-35104 bp Feature: gene Location: 35370-35858 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 35565-35829 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 35565-35829 bp Feature: gene Location: 35911-37218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36196-36835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36196-36835 bp Feature: domain Description: GIIM Note: maturase Location: 36907-37135 bp Feature: domain Description: GIIM Note: maturase Location: 36907 -37 135 bp Feature: gene Location: 37337-37465 bp Feature: gene Location: 37723-38148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), Dimer_Tnp_Tn5 (pfam02281), RVT-GII, GIIM (pfam08388)

Seq: RCOH01000065.1 Cupriavidus necator H850 scaffold_64, whole genome shotgun sequence (35760 bp)
Overview 1 RT 1: 7968-12144 bp Neighborhood of RT #1 [7968, 12164] muco_delta RVT-GII GIIM PRK06143 CoA_transf_3 Feature: gene Location: 7968-8243 bp Feature: domain Description: muco_delta Location: 7974-8241 bp Feature: domain Description: muco_delta Location: 7974-8 241 bp Feature: gene Location: 8266-8499 bp Feature: gene Location: 8602-9891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8905-9538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 905-9538 bp Feature: domain Description: GIIM Note: maturase Location: 9613-9739 bp Feature: domain Description: GIIM Note: maturase Location: 9613-9739 bp Feature: gene Location: 11267-11473 bp Feature: domain Description: PRK06143 Location: 11279-11462 bp Feature: domain Description: PRK06143 Location: 11279-11462 bp Feature: gene Location: 11475-12164 bp Feature: domain Description: CoA_transf_3 Location: 11499-12144 bp Feature: domain Description: CoA_transf_3 Location: 11499-12144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT muco_delta (TIGR03221), RVT-GII, GIIM (pfam08388), PRK06143 (enoyl-CoA hydratase; Provisional), CoA_transf_3 (pfam02515)

Seq: RCOH01000073.1 Cupriavidus necator H850 scaffold_72, whole genome shotgun sequence (29967 bp)
Overview 1 RT 1: 12097-16706 bp Neighborhood of RT #1 [12097, 16706] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT_N RVT-GII GIIM IS5 Feature: gene Location: 12097-13068 bp Feature: domain Description: INT_RitB_C_like Location: 12427-13024 bp Feature: domain Description: INT_RitB_C_like Location: 12427-13024 bp Feature: gene Location: 13055-14290 bp Feature: domain Description: Phage_int_SAM_1 Location: 13391-13634 bp Feature: domain Description: Phage_int_SAM_1 Location: 1339 1-13634 bp Feature: domain Description: INT_RitA_C_like Location: 13730-14234 bp Feature: domain Description: INT_RitA_C_like Location: 13730-14234 bp Feature: gene Location: 14398-15780 bp Feature: domain Description: RVT_N Location: 14428-14614 bp Feature: domain Description: RVT_N Location: 14428-14614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14659-15301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14659 -15301 bp Feature: domain Description: GIIM Note: maturase Location: 15355-15586 bp Feature: domain Description: GIIM Note: maturase Location: 15355-15586 bp Feature: gene Location: 15805-16359 bp Feature: domain Description: IS5 Location: 15901-16321 bp Feature: domain Description: IS5 Location: 159 01-16321 bp Feature: gene Location: 16539-16706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: RCOH01000099.1 Cupriavidus necator H850 scaffold_98, whole genome shotgun sequence (15985 bp)
Overview 1 RT 1: 3-3004 bp Neighborhood of RT #1 [3, 3004] InsE RVT-GII GIIM rve PRK08268 Feature: gene Location: 3-239 bp Feature: domain Description: InsE Location: 6-237 bp Feature: domain Description: InsE Location: 6-237 bp Feature: gene Location: 423-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696-1434 bp Feature: domain Description: GIIM Note: maturase Location: 1545-1707 bp Feature: domain Description: GIIM Note: maturase Location: 1545-1707 bp Feature: gene Location: 2084-2710 bp Feature: domain Description: rve Location: 2090-2357 bp Feature: domain Description: rve Location: 2090-2357 bp Feature: domain Description: PRK08268 Location: 2381-2582 bp Feature: domain Description: PRK08268 Location: 2381-2582 bp Feature: gene Location: 2822-3004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), rve (pfam00665), PRK08268 (3-hydroxy-acyl-CoA dehydrogenase; Validated)