myRT

myRT report for GCA_009664975.1_ASM966497v1

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Seq: WJXB01000016.1 Paenibacillus sp. LC-T2 Scaffold14_1, whole genome shotgun sequence (130837 bp)
Overview 1 RT 1: 123089-127080 bp Neighborhood of RT #1 [123089, 127874] L-Ala-D-Glu_peptidase_like Phage_holin_5_1 RVT-UG7 AAA_15 AAA_15 Feature: gene Location: 123089-123880 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 123134-123512 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 1 231 34-1 2351 2 bp Feature: gene Location: 123883-124188 bp Feature: domain Description: Phage_holin_5_1 Location: 123907-124108 bp Feature: domain Description: Phage_holin_5_1 Location: 1 23907-1 241 08 bp Feature: gene Location: 124300-125886 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 124693-125125 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 24693-1 251 25 bp Feature: gene Location: 125962-126090 bp Feature: gene Location: 126183-127874 bp Feature: domain Description: AAA_15 Location: 126186-126321 bp Feature: domain Description: AAA_1 5 Location: 1 261 86-1 26321 bp Feature: domain Description: AAA_15 Location: 126771-127080 bp Feature: domain Description: AAA_1 5 Location: 1 26771 -1 27080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L-Ala-D-Glu_peptidase_like (cd14845), Phage_holin_5_1 (pfam06946), RVT-UG7, AAA_15 (pfam13175)

Seq: WJXB01000002.1 Paenibacillus sp. LC-T2 Scaffold2_1, whole genome shotgun sequence (1034249 bp)
Overview 1 RT 1: 968733-971630 bp Neighborhood of RT #1 [968733, 971713] COG3666 RVT-GII YncM_like Feature: gene Location: 968733-968885 bp Feature: gene Location: 968903-969211 bp Feature: domain Description: COG3666 Location: 968906-969098 bp Feature: domain Description: COG3666 Location: 968906-969098 bp Feature: gene Location: 969211-969945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969466-969865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969466-969865 bp Feature: gene Location: 970024-970197 bp Feature: gene Location: 970613-971713 bp Feature: domain Description: YncM_like Location: 971096-971630 bp Feature: domain Description: YncM_like Location: 971096-971630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), RVT-GII, YncM_like (cd13427)

Seq: WJXB01000003.1 Paenibacillus sp. LC-T2 Scaffold3_1, whole genome shotgun sequence (809965 bp)
Overview 1 RT 1: 735273-739884 bp Neighborhood of RT #1 [735273, 739919] MdaB Tra8 RVT-GII GIIM AraC_binding GlxA Feature: gene Location: 735273-735905 bp Feature: domain Description: MdaB Location: 735378-735885 bp Feature: domain Description: MdaB Location: 73 53 78-73 5885 bp Feature: gene Location: 735944-736900 bp Feature: domain Description: Tra8 Location: 735950-736892 bp Feature: domain Description: Tra8 Location: 73 5950-73 6892 bp Feature: gene Location: 737077-738339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737272-737893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 7272-73 7893 bp Feature: domain Description: GIIM Note: maturase Location: 737944-738154 bp Feature: domain Description: GIIM Note: maturase Location: 73 7944-73 8154 bp Feature: gene Location: 738466-738831 bp Feature: gene Location: 738963-739919 bp Feature: domain Description: AraC_binding Location: 739137-739293 bp Feature: domain Description: AraC_binding Location: 73 913 7-73 9293 bp Feature: domain Description: GlxA Location: 739590-739884 bp Feature: domain Description: GlxA Location: 73 9590-73 9884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdaB (COG2249), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), AraC_binding (pfam02311), GlxA (COG4977)

Seq: WJXB01000010.1 Paenibacillus sp. LC-T2 Scaffold8_1, whole genome shotgun sequence (304510 bp)
Overview 1 RT 1: 274830-278732 bp Neighborhood of RT #1 [274830, 278732] group_II_RT_mat GIIM RVT-GII RVT-GII Feature: gene Location: 274830-275225 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 274845-275145 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 274 84 5-27514 5 bp Feature: gene Location: 275418-275693 bp Feature: domain Description: GIIM Note: maturase Location: 275430-275610 bp Feature: domain Description: GIIM Note: maturase Location: 2754 30-275610 bp Feature: gene Location: 275813-276664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276017-276548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276017-27654 8 bp Feature: gene Location: 276740-276949 bp Feature: gene Location: 277178-277984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277478-277961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774 78-277961 bp Feature: gene Location: 278351-278497 bp Feature: gene Location: 278601-278732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), GIIM (pfam08388), RVT-GII