myRT

myRT report for GCA_009668315.1_ASM966831v1

Download annotations/find similar RTs

Seq: VSWG01000120.1 Pseudomonas sp. CAH-1 NODE_120_length_1925_cov_63.525584, whole genome shotgun sequence (1925 bp)
Overview 1 RT 1: 73-1249 bp Neighborhood of RT #1 [73, 1428] RVT-GII GIIM Feature: gene Location: 73-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-979 bp Feature: domain Description: GIIM Note: maturase Location: 1036-1249 bp Feature: domain Description: GIIM Note: maturase Location: 1 036-1 249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VSWG01000046.1 Pseudomonas sp. CAH-1 NODE_46_length_36426_cov_24.148737, whole genome shotgun sequence (36426 bp)
Overview 1 RT 1: 10861-17105 bp Neighborhood of RT #1 [10861, 17158] UvrD UvrD UvrD RVT-UG12 pPIWI_RE_Y pPIWI_RE_REase Feature: gene Location: 10861-12528 bp Feature: domain Description: UvrD Location: 10924-11176 bp Feature: domain Description: UvrD Location: 1092 4-11176 bp Feature: domain Description: UvrD Location: 11260-11998 bp Feature: domain Description: UvrD Location: 112 60-11998 bp Feature: domain Description: UvrD Location: 12244-12424 bp Feature: domain Description: UvrD Location: 12 2 44-12 42 4 bp Feature: gene Location: 12773-13990 bp Feature: gene Location: 14030-15766 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 14366-14822 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 14366-1482 2 bp Feature: gene Location: 15849-16067 bp Feature: gene Location: 16124-17158 bp Feature: domain Description: pPIWI_RE_Y Location: 16241-16541 bp Feature: domain Description: pPIWI_RE_Y Location: 162 41-16541 bp Feature: domain Description: pPIWI_RE_REase Location: 16850-17105 bp Feature: domain Description: pPIWI_RE_REase Location: 16850-17105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-UG12, pPIWI_RE_Y (pfam18156), pPIWI_RE_REase (pfam18154)

Seq: VSWG01000067.1 Pseudomonas sp. CAH-1 NODE_67_length_22771_cov_26.474563, whole genome shotgun sequence (22771 bp)
Overview 1 RT 1: 8809-13703 bp Neighborhood of RT #1 [8809, 13735] PRK13348 PBP2_LTTR_like_1 RVT-Retrons MFS_MucK Feature: gene Location: 8809-9729 bp Feature: domain Description: PRK13348 Location: 8821-9031 bp Feature: domain Description: PRK13 3 48 Location: 8821-903 1 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 9094-9685 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 9094-9685 bp Feature: gene Location: 10276-10578 bp Feature: gene Location: 10581-11423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10584-11151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10584-11151 bp Feature: gene Location: 11841-11978 bp Feature: gene Location: 12416-13735 bp Feature: domain Description: MFS_MucK Location: 12512-13703 bp Feature: domain Description: MFS_MucK Location: 12512-13 703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421), RVT-Retrons, MFS_MucK (cd17371)