myRT

myRT report for GCA_009677035.1_ASM967703v1

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Seq: WKMY01000010.1 Parabacteroides distasonis strain BIOML-A9 scaffold10_size188202, whole genome shotgun sequence (188202 bp)
Overview 1 RT 1: 1-2857 bp Neighborhood of RT #1 [1, 2857] RVT-DGRs Feature: gene Location: 1-564 bp Feature: gene Location: 640-1941 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 853-1447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 853-1 447 bp Feature: gene Location: 1938-2423 bp Feature: gene Location: 2615-2857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WKMY01000019.1 Parabacteroides distasonis strain BIOML-A9 scaffold19_size110900, whole genome shotgun sequence (110900 bp)
Overview 1 RT 1: 106630-110820 bp Neighborhood of RT #1 [106630, 110897] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 106630-106872 bp Feature: gene Location: 107076-107561 bp Feature: gene Location: 107558-108859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107771-108365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107771-108365 bp Feature: gene Location: 109235-109468 bp Feature: gene Location: 109566-110897 bp Feature: domain Description: TipAS Location: 109698-110013 bp Feature: domain Description: TipAS Location: 109698-110013 bp Feature: domain Description: COG2369 Location: 110133-110319 bp Feature: domain Description: COG2 369 Location: 110133-110319 bp Feature: domain Description: LPD3 Location: 110538-110820 bp Feature: domain Description: LPD3 Location: 110538-11082 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: WKMY01000001.1 Parabacteroides distasonis strain BIOML-A9 scaffold1_size909884, whole genome shotgun sequence (909884 bp)
Overview 1 RT 1: 73309-80948 bp Neighborhood of RT #1 [73309, 81100] RVT-DGRs ChtBD3 KOG3544 Peptidase_S74 Feature: gene Location: 73309-74781 bp Feature: gene Location: 74969-75163 bp Feature: gene Location: 75267-76781 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75474-76221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75474-76221 bp Feature: gene Location: 76839-77234 bp Feature: gene Location: 77246-81100 bp Feature: domain Description: ChtBD3 Location: 79523-79613 bp Feature: domain Description: ChtBD3 Location: 79523 -79613 bp Feature: domain Description: KOG3544 Location: 80024-80123 bp Feature: domain Description: KOG3 544 Location: 80024-80123 bp Feature: domain Description: Peptidase_S74 Location: 80795-80948 bp Feature: domain Description: Peptidase_S74 Location: 80795-80948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChtBD3 (smart00495), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), Peptidase_S74 (pfam13884)

Seq: WKMY01000002.1 Parabacteroides distasonis strain BIOML-A9 scaffold2_size403172, whole genome shotgun sequence (403172 bp)
Overview 1 RT 1: 307579-311817 bp Neighborhood of RT #1 [307579, 312797] RibD_C TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 307579-308073 bp Feature: domain Description: RibD_C Location: 307885-308047 bp Feature: domain Description: RibD_C Location: 307885-30804 7 bp Feature: gene Location: 308295-309326 bp Feature: domain Description: TraG-D_C Location: 308670-309006 bp Feature: domain Description: TraG-D_C Location: 308670-309006 bp Feature: gene Location: 309290-311107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309557-310379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309557-310379 bp Feature: domain Description: Intron_maturas2 Location: 310523-310757 bp Feature: domain Description: Intron_maturas2 Location: 310523-310757 bp Feature: domain Description: HNHc Note: nucleases Location: 310928-311078 bp Feature: domain Description: HNHc Note: nucleases Location: 310928-311078 bp Feature: gene Location: 311274-311558 bp Feature: gene Location: 311634-312797 bp Feature: domain Description: YWFCY Location: 311640-311817 bp Feature: domain Description: YWFCY Location: 31164 0-311817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RibD_C (pfam01872), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WKMY01000006.1 Parabacteroides distasonis strain BIOML-A9 scaffold6_size305941, whole genome shotgun sequence (305941 bp)
Overview 1 RT 1: 301631-305273 bp Neighborhood of RT #1 [301631, 305938] RVT-DGRs Phage_Mu_F Feature: gene Location: 301631-301873 bp Feature: gene Location: 302063-302548 bp Feature: gene Location: 302548-303849 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 302761-303355 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 302761-30335 5 bp Feature: gene Location: 304228-304461 bp Feature: gene Location: 304571-305938 bp Feature: domain Description: Phage_Mu_F Location: 304997-305273 bp Feature: domain Description: Phage_Mu_F Location: 304997-305 273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: WKMY01000008.1 Parabacteroides distasonis strain BIOML-A9 scaffold8_size207558, whole genome shotgun sequence (207558 bp)
Overview 1 RT 1: 138765-148057 bp Neighborhood of RT #1 [138765, 148057] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 138765-138908 bp Feature: gene Location: 139046-139261 bp Feature: domain Description: DUF4134 Location: 139064-139247 bp Feature: domain Description: DUF4134 Location: 13906 4-139247 bp Feature: gene Location: 139865-141538 bp Feature: RT Description: RVT_N Location: 139928-140171 bp Feature: RT Description: RVT_N Location: 139928-140171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140216-140864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140216 -14086 4 bp Feature: domain Description: GIIM Note: maturase Location: 140921-141152 bp Feature: domain Description: GIIM Note: maturase Location: 140921-141152 bp Feature: gene Location: 141535-141756 bp Feature: domain Description: DUF4134 Location: 141661-141751 bp Feature: domain Description: DUF4134 Location: 1416 6 1-141751 bp Feature: gene Location: 141758-142090 bp Feature: domain Description: DUF4133 Location: 141776-142043 bp Feature: domain Description: DUF4133 Location: 141776 -142043 bp Feature: gene Location: 142087-144117 bp Feature: domain Description: Bac_Flav_CT_G Location: 142090-144112 bp Feature: domain Description: Bac_Flav_CT_G Location: 142090-144112 bp Feature: gene Location: 144311-144517 bp Feature: gene Location: 144715-146397 bp Feature: RT Description: RVT_N Location: 144796-145039 bp Feature: RT Description: RVT_N Location: 144796 -145039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145084-145732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145084-145732 bp Feature: domain Description: GIIM Note: maturase Location: 145783-146017 bp Feature: domain Description: GIIM Note: maturase Location: 145783-146 017 bp Feature: gene Location: 146400-147008 bp Feature: domain Description: Bac_Flav_CT_G Location: 146517-146976 bp Feature: domain Description: Bac_Flav_CT_G Location: 146 517-146 976 bp Feature: gene Location: 147032-148057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)