myRT

myRT report for GCA_009677935.1_ASM967793v1

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Seq: WKNO01000026.1 Odoribacter splanchnicus strain BIOML-A3 scaffold26_size69573, whole genome shotgun sequence (69573 bp)
Overview 1 RT 1: 36915-40985 bp Neighborhood of RT #1 [36915, 41062] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 36915-37157 bp Feature: gene Location: 37361-37846 bp Feature: gene Location: 37843-39144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38056-38653 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38056-38653 bp Feature: gene Location: 39520-39753 bp Feature: gene Location: 39851-41062 bp Feature: domain Description: TipAS Location: 39875-40178 bp Feature: domain Description: TipAS Location: 39875-401 78 bp Feature: domain Description: COG2369 Location: 40298-40484 bp Feature: domain Description: COG2369 Location: 40298-40484 bp Feature: domain Description: LPD3 Location: 40703-40985 bp Feature: domain Description: LPD3 Location: 40703-40985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: WKNO01000002.1 Odoribacter splanchnicus strain BIOML-A3 scaffold2_size243364, whole genome shotgun sequence (243364 bp)
Overview 1 RT 1: 132468-136401 bp Neighborhood of RT #1 [132468, 136401] RVT-UG27 Feature: gene Location: 132468-133115 bp Feature: gene Location: 133129-133797 bp Feature: gene Location: 133790-135052 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 133982-134618 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 133982 -134618 bp Feature: gene Location: 135375-135872 bp Feature: gene Location: 135922-136401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WKNO01000041.1 Odoribacter splanchnicus strain BIOML-A3 scaffold41_size32290, whole genome shotgun sequence (32290 bp)
Overview 1 RT 1: 2-2728 bp Neighborhood of RT #1 [2, 3375] RVT-GII GIIM IstB_IS21 HTH_23 COG4584 Feature: gene Location: 2-199 bp Feature: gene Location: 314-907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 17-461 bp Feature: domain Description: GIIM Note: maturase Location: 515-746 bp Feature: domain Description: GIIM Note: maturase Location: 515-746 bp Feature: gene Location: 1047-1820 bp Feature: domain Description: IstB_IS21 Location: 1248-1773 bp Feature: domain Description: IstB_IS21 Location: 1248-1773 bp Feature: gene Location: 1810-3375 bp Feature: domain Description: HTH_23 Location: 1819-1945 bp Feature: domain Description: HTH_23 Location: 1819-1945 bp Feature: domain Description: COG4584 Location: 2068-2728 bp Feature: domain Description: COG4584 Location: 2068-2728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), HTH_23 (pfam13384), COG4584 (Transposase )

Seq: WKNO01000048.1 Odoribacter splanchnicus strain BIOML-A3 scaffold48_size15284, whole genome shotgun sequence (15284 bp)
Overview 1 RT 1: 3801-7648 bp Neighborhood of RT #1 [3801, 7794] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 3801-5216 bp Feature: gene Location: 5293-5658 bp Feature: gene Location: 5904-6914 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6114-6702 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6114 -6702 bp Feature: gene Location: 6892-7299 bp Feature: gene Location: 7303-7794 bp Feature: domain Description: Phage_holin_4_1 Location: 7354-7648 bp Feature: domain Description: Phage_holin_4 _1 Location: 7354 -764 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WKNO01000004.1 Odoribacter splanchnicus strain BIOML-A3 scaffold4_size187323, whole genome shotgun sequence (187323 bp)
Overview 1 RT 1: 90952-97132 bp Neighborhood of RT #1 [90952, 97132] KAP_NTPase TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 90952-93663 bp Feature: domain Description: KAP_NTPase Location: 91156-91525 bp Feature: domain Description: KAP_NTPase Location: 9115 6-915 25 bp Feature: gene Location: 93795-95009 bp Feature: domain Description: TraG-D_C Location: 94377-94707 bp Feature: domain Description: TraG-D_C Location: 94377-94707 bp Feature: gene Location: 95014-96666 bp Feature: domain Description: RVT_N Location: 95068-95311 bp Feature: domain Description: RVT_N Location: 95 068-95 311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95356-96004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 35 6-96004 bp Feature: domain Description: GIIM Note: maturase Location: 96058-96289 bp Feature: domain Description: GIIM Note: maturase Location: 9605 8-96289 bp Feature: gene Location: 96748-96921 bp Feature: gene Location: 96983-97132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WKNO01000006.1 Odoribacter splanchnicus strain BIOML-A3 scaffold6_size167282, whole genome shotgun sequence (167282 bp)
Overview 1 RT 1: 81605-86794 bp Neighborhood of RT #1 [81605, 86808] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 81605-81919 bp Feature: domain Description: DUF3876 Location: 81659-81908 bp Feature: domain Description: DUF3876 Location: 816 59-81908 bp Feature: gene Location: 81934-83628 bp Feature: domain Description: Bac_Flav_CT_G Location: 82054-83620 bp Feature: domain Description: Bac_Flav_CT_G Location: 82054-836 20 bp Feature: gene Location: 83625-85286 bp Feature: domain Description: RVT_N Location: 83679-83922 bp Feature: domain Description: RVT_N Location: 836 79-83922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83967-84615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8396 7-846 15 bp Feature: domain Description: GIIM Note: maturase Location: 84669-84900 bp Feature: domain Description: GIIM Note: maturase Location: 846 6 9-84900 bp Feature: gene Location: 85371-85748 bp Feature: gene Location: 85870-86808 bp Feature: domain Description: Bac_Flav_CT_G Location: 85873-86794 bp Feature: domain Description: Bac_Flav_CT_G Location: 85873-86 794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)