myRT

myRT report for GCA_009678115.1_ASM967811v1

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Seq: WKPJ01000013.1 Holdemania massiliensis strain BIOML-A4 scaffold13_size80546, whole genome shotgun sequence (80546 bp)
Overview 1 RT 1: 41918-44767 bp Neighborhood of RT #1 [41918, 44767] Transposase_20 RVT-GII RVT-GII GIIM Feature: gene Location: 41918-42148 bp Feature: gene Location: 42158-42556 bp Feature: domain Description: Transposase_20 Location: 42260-42521 bp Feature: domain Description: Transposase_20 Location: 42260-42521 bp Feature: gene Location: 43323-43772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43464-43755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43464-43755 bp Feature: gene Location: 43857-44162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43866-44043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43866-44043 bp Feature: gene Location: 44147-44395 bp Feature: domain Description: GIIM Note: maturase Location: 44153-44306 bp Feature: domain Description: GIIM Note: maturase Location: 441 53-44306 bp Feature: gene Location: 44585-44767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388)

Seq: WKPJ01000001.1 Holdemania massiliensis strain BIOML-A4 scaffold1_size373924, whole genome shotgun sequence (373924 bp)
Overview 1 RT 1: 49617-54776 bp Neighborhood of RT #1 [49617, 54776] PHA03100 Rhs_assc_core RVT-GII Intron_maturas2 HNHc Feature: gene Location: 49617-50138 bp Feature: domain Description: PHA03100 Location: 49692-49968 bp Feature: domain Description: PHA03100 Location: 49692 -49968 bp Feature: gene Location: 50680-51687 bp Feature: domain Description: Rhs_assc_core Location: 50752-50995 bp Feature: domain Description: Rhs_assc_core Location: 50752 -50995 bp Feature: gene Location: 51782-53614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52046-52877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 046-52 877 bp Feature: domain Description: Intron_maturas2 Location: 52949-53264 bp Feature: domain Description: Intron_maturas2 Location: 52 949-532 64 bp Feature: domain Description: HNHc Note: nucleases Location: 53411-53585 bp Feature: domain Description: HNHc Note: nucleases Location: 53411-53585 bp Feature: gene Location: 53860-54075 bp Feature: gene Location: 54159-54776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA03100 (ankyrin repeat protein; Provisional), Rhs_assc_core (TIGR03696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKPJ01000003.1 Holdemania massiliensis strain BIOML-A4 scaffold3_size222777, whole genome shotgun sequence (222777 bp)
Overview 1 RT 1: 33645-40205 bp Neighborhood of RT #1 [33645, 40210] SLATT_5 RVT-UG17 DHFR_1 PLN02563 PLN02563 Feature: gene Location: 33645-34028 bp Feature: gene Location: 34308-34874 bp Feature: domain Description: SLATT_5 Location: 34326-34854 bp Feature: domain Description: SLATT_5 Location: 3 43 26-3 4854 bp Feature: gene Location: 34880-36208 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 35108-35702 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 5108-3 5702 bp Feature: gene Location: 37222-37698 bp Feature: domain Description: DHFR_1 Location: 37228-37657 bp Feature: domain Description: DHFR_1 Location: 3 7228-3 7657 bp Feature: gene Location: 37799-40210 bp Feature: domain Description: PLN02563 Location: 37808-39521 bp Feature: domain Description: PLN02563 Location: 3 7808-3 9521 bp Feature: domain Description: PLN02563 Location: 39533-40205 bp Feature: domain Description: PLN02563 Location: 3 953 3 -40205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DHFR_1 (pfam00186), PLN02563 (aminoacyl-tRNA ligase)

Seq: WKPJ01000044.1 Holdemania massiliensis strain BIOML-A4 scaffold44_size28547, whole genome shotgun sequence (28547 bp)
Overview 1 RT 1: 21676-26729 bp Neighborhood of RT #1 [21676, 26776] COG2768 Hit RVT-GII GIIM MATE_yoeA_like Feature: gene Location: 21676-22782 bp Feature: domain Description: COG2768 Location: 21688-22777 bp Feature: domain Description: COG2768 Location: 21688-22777 bp Feature: gene Location: 22795-23205 bp Feature: domain Description: Hit Location: 22798-23155 bp Feature: domain Description: Hit Location: 22798-23155 bp Feature: gene Location: 23369-24655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23690-24314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23690-24 314 bp Feature: domain Description: GIIM Note: maturase Location: 24371-24599 bp Feature: domain Description: GIIM Note: maturase Location: 24 371-24 599 bp Feature: gene Location: 24893-25102 bp Feature: gene Location: 25388-26776 bp Feature: domain Description: MATE_yoeA_like Location: 25439-26729 bp Feature: domain Description: MATE_yoeA_like Location: 254 39-26729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2768 (Uncharacterized Fe-S cluster protein ), Hit (COG0537), RVT-GII, GIIM (pfam08388), MATE_yoeA_like (cd13138)

Seq: WKPJ01000072.1 Holdemania massiliensis strain BIOML-A4 scaffold72_size2505, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)