myRT

myRT report for GCA_009678245.1_ASM967824v1

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Seq: WKPR01000015.1 Flavonifractor plautii strain BIOML-A2 scaffold15_size87526, whole genome shotgun sequence (87526 bp)
Overview 1 RT 1: 10532-13737 bp Neighborhood of RT #1 [10532, 13790] ChiA1_BD ChtBD3 RVT-DGRs COG4877 Feature: gene Location: 10532-10933 bp Feature: gene Location: 10923-11540 bp Feature: domain Description: ChiA1_BD Location: 11238-11367 bp Feature: domain Description: ChiA1 _BD Location: 1 1 238-1 1 367 bp Feature: domain Description: ChtBD3 Location: 11427-11508 bp Feature: domain Description: ChtBD3 Location: 1 1 427-1 1 508 bp Feature: gene Location: 11501-12673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11780-12395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 780-1 2395 bp Feature: gene Location: 13134-13598 bp Feature: gene Location: 13602-13790 bp Feature: domain Description: COG4877 Location: 13608-13737 bp Feature: domain Description: COG4877 Location: 1 3608-1 3737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), ChtBD3 (smart00495), RVT-DGRs, COG4877 (Uncharacterized protein )

Seq: WKPR01000020.1 Flavonifractor plautii strain BIOML-A2 scaffold20_size188965, whole genome shotgun sequence (188969 bp)
Overview 1 RT 1: 37612-42895 bp Neighborhood of RT #1 [37612, 42895] DUF3751 Avd_like RVT-DGRs Feature: gene Location: 37612-38499 bp Feature: domain Description: DUF3751 Location: 37627-38074 bp Feature: domain Description: DUF3751 Location: 3762 7-38074 bp Feature: gene Location: 38725-39138 bp Feature: domain Description: Avd_like Location: 38752-39085 bp Feature: domain Description: Avd_like Location: 38752 -39085 bp Feature: gene Location: 39520-40641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39724-40390 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3972 4-40390 bp Feature: gene Location: 40626-42344 bp Feature: gene Location: 42341-42895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), Avd_like (cd16376), RVT-DGRs

Seq: WKPR01000022.1 Flavonifractor plautii strain BIOML-A2 scaffold22_size54962, whole genome shotgun sequence (54962 bp)
Overview 1 RT 1: 37737-43369 bp Neighborhood of RT #1 [37737, 43369] DUF3751 RVT-DGRs Feature: gene Location: 37737-40070 bp Feature: domain Description: DUF3751 Location: 37740-38181 bp Feature: domain Description: DUF3 751 Location: 3 7740-3 8181 bp Feature: gene Location: 40330-40794 bp Feature: gene Location: 41248-42423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41527-42142 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41527-42142 bp Feature: gene Location: 42384-43061 bp Feature: gene Location: 43181-43369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), RVT-DGRs

Seq: WKPR01000023.1 Flavonifractor plautii strain BIOML-A2 scaffold23_size90800, whole genome shotgun sequence (90800 bp)
Overview 1 RT 1: 33546-39741 bp Neighborhood of RT #1 [33546, 39806] ALDH_Acyl-CoA-Red_LuxC PRK08279 FACL_like_6 RVT-Retrons TrmO TrmO_C Feature: gene Location: 33546-34697 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 33729-34683 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 33729-34 683 bp Feature: gene Location: 34707-36140 bp Feature: domain Description: PRK08279 Location: 34734-34995 bp Feature: domain Description: PRK08279 Location: 34 734 -34 995 bp Feature: domain Description: FACL_like_6 Location: 35079-36129 bp Feature: domain Description: FACL_like_6 Location: 35079-36129 bp Feature: gene Location: 36316-37449 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36640-37186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3664 0-37186 bp Feature: gene Location: 37466-39061 bp Feature: gene Location: 39099-39806 bp Feature: domain Description: TrmO Location: 39156-39525 bp Feature: domain Description: TrmO Location: 39156-39525 bp Feature: domain Description: TrmO_C Location: 39579-39741 bp Feature: domain Description: TrmO_C Location: 39579-3974 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_Acyl-CoA-Red_LuxC (cd07080), PRK08279 (long-chain-acyl-CoA synthetase; Validated), FACL_like_6 (cd05922), RVT-Retrons, TrmO, TrmO_C (pfam18389)

Seq: WKPR01000003.1 Flavonifractor plautii strain BIOML-A2 scaffold3_size312109, whole genome shotgun sequence (311923 bp)
Overview 1 RT 1: 73842-77062 bp Neighborhood of RT #1 [73842, 77109] RVT-DGRs COG4877 Feature: gene Location: 73842-74246 bp Feature: gene Location: 74246-74893 bp Feature: gene Location: 74890-76149 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75253-75871 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75 25 3-75 871 bp Feature: gene Location: 76466-76924 bp Feature: gene Location: 76927-77109 bp Feature: domain Description: COG4877 Location: 76933-77062 bp Feature: domain Description: COG4877 Location: 76933-77062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG4877 (Uncharacterized protein )

Seq: WKPR01000004.1 Flavonifractor plautii strain BIOML-A2 scaffold4_size453640, whole genome shotgun sequence (453383 bp)
Overview 1 RT 1: 191880-194607 bp 2 RT 2: 280625-286116 bp 3 RT 3: 396873-401414 bp Neighborhood of RT #1 [191880, 194607] RVT-DGRs Neighborhood of RT #2 [280625, 286154] TrbC VirD4 RVT-GII HNHc VirD4 DUF3801 Neighborhood of RT #3 [396873, 401414] Avd_like RVT-DGRs FN3 FN3 Feature: gene Location: 191880-192338 bp Feature: gene Location: 192335-192637 bp Feature: gene Location: 192564-193508 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 192570-193152 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 192570-193152 bp Feature: gene Location: 194044-194181 bp Feature: gene Location: 194215-194607 bp Feature: gene Location: 280625-280951 bp Feature: domain Description: TrbC Location: 280661-280919 bp Feature: domain Description: TrbC Location: 2806 6 1-280919 bp Feature: gene Location: 280948-281277 bp Feature: domain Description: VirD4 Location: 280954-281161 bp Feature: domain Description: VirD4 Location: 280954-28116 1 bp Feature: gene Location: 281478-283313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281802-282510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281802-282510 bp Feature: domain Description: HNHc Note: nucleases Location: 283125-283236 bp Feature: domain Description: HNHc Note: nucleases Location: 283125-283236 bp Feature: gene Location: 283953-285359 bp Feature: domain Description: VirD4 Location: 284202-285330 bp Feature: domain Description: VirD4 Location: 284202-285330 bp Feature: gene Location: 285420-286154 bp Feature: domain Description: DUF3801 Location: 285516-286116 bp Feature: domain Description: DUF3801 Location: 285516 -286 116 bp Feature: gene Location: 396873-397463 bp Feature: domain Description: Avd_like Location: 397080-397356 bp Feature: domain Description: Avd_like Location: 397080-397356 bp Feature: gene Location: 397499-397642 bp Feature: gene Location: 397745-399031 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 398069-398669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39806 9-3986 6 9 bp Feature: gene Location: 399055-400908 bp Feature: domain Description: FN3 Location: 399730-399949 bp Feature: domain Description: FN3 Location: 399730-399949 bp Feature: domain Description: FN3 Location: 400024-400294 bp Feature: domain Description: FN3 Location: 400024-400294 bp Feature: gene Location: 400935-401414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TrbC (pfam04956), VirD4 (COG3505), RVT-GII, HNHc (smart00507), DUF3801 (pfam12687), Avd_like (cd16376), FN3 (smart00060)

Seq: WKPR01000056.1 Flavonifractor plautii strain BIOML-A2 scaffold56_size21806, whole genome shotgun sequence (21878 bp)
Overview 1 RT 1: 15187-19829 bp Neighborhood of RT #1 [15187, 19834] TraG-D_C Maff2 RVT-GII HNHc YozG TnpV Feature: gene Location: 15187-15858 bp Feature: domain Description: TraG-D_C Location: 15301-15655 bp Feature: domain Description: TraG-D_C Location: 15301-15655 bp Feature: gene Location: 16076-16207 bp Feature: domain Description: Maff2 Location: 16079-16205 bp Feature: domain Description: Maff2 Location: 1607 9-16205 bp Feature: gene Location: 16927-18813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17260-17998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 260-17 998 bp Feature: domain Description: HNHc Note: nucleases Location: 18547-18697 bp Feature: domain Description: HNHc Note: nucleases Location: 18547 -18697 bp Feature: gene Location: 19426-19617 bp Feature: domain Description: YozG Location: 19438-19555 bp Feature: domain Description: YozG Location: 19438-19555 bp Feature: gene Location: 19577-19834 bp Feature: domain Description: TnpV Location: 19622-19829 bp Feature: domain Description: TnpV Location: 19622-19829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), YozG (COG3655), TnpV (pfam14198)

Seq: WKPR01000005.1 Flavonifractor plautii strain BIOML-A2 scaffold5_size224438, whole genome shotgun sequence (224234 bp)
Overview 1 RT 1: 127491-132328 bp Neighborhood of RT #1 [127491, 132328] RVT-DGRs Feature: gene Location: 127491-127634 bp Feature: gene Location: 127648-127992 bp Feature: gene Location: 127940-129100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 128150-128759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 128 150-128 759 bp Feature: gene Location: 129452-131299 bp Feature: gene Location: 131321-132328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WKPR01000007.1 Flavonifractor plautii strain BIOML-A2 scaffold7_size133614, whole genome shotgun sequence (133614 bp)
Overview 1 RT 1: 106822-111064 bp Neighborhood of RT #1 [106822, 111099] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 106822-107241 bp Feature: domain Description: Avd_like Location: 106867-107191 bp Feature: domain Description: Avd_like Location: 106867-10719 1 bp Feature: gene Location: 107257-107499 bp Feature: gene Location: 107571-108677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107772-108378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107772-108378 bp Feature: gene Location: 108619-110316 bp Feature: gene Location: 110329-111099 bp Feature: domain Description: ChiA1_BD Location: 110611-110686 bp Feature: domain Description: ChiA1_BD Location: 110611-110686 bp Feature: domain Description: ChiA1_BD Location: 110965-111064 bp Feature: domain Description: ChiA1_BD Location: 1109 65-111064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, ChiA1_BD (cd12214)

Seq: WKPR01000088.1 Flavonifractor plautii strain BIOML-A2 scaffold88_size2508, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 3-2064 bp Neighborhood of RT #1 [3, 2399] RVT-GII Intron_maturas2 Feature: gene Location: 3-215 bp Feature: gene Location: 287-415 bp Feature: gene Location: 588-2399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1686 bp Feature: domain Description: Intron_maturas2 Location: 1755-2064 bp Feature: domain Description: Intron_maturas2 Location: 1755-2064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)