myRT

myRT report for GCA_009678725.1_ASM967872v1

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Seq: WKMS01000116.1 Parabacteroides distasonis strain BIOML-A16 scaffold124_size5753, whole genome shotgun sequence (5753 bp)
Overview 1 RT 1: 278-3255 bp Neighborhood of RT #1 [278, 3320] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 278-460 bp Feature: domain Description: DUF4134 Location: 287-437 bp Feature: domain Description: DUF41 34 Location: 287-437 bp Feature: gene Location: 531-782 bp Feature: gene Location: 1062-2711 bp Feature: domain Description: RVT_N Location: 1119-1362 bp Feature: domain Description: RVT_N Location: 1 1 1 9-1 362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407-2055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 407-2055 bp Feature: domain Description: GIIM Note: maturase Location: 2112-2343 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 2-2343 bp Feature: gene Location: 2716-2958 bp Feature: domain Description: DUF4134 Location: 2863-2953 bp Feature: domain Description: DUF41 34 Location: 2863-2953 bp Feature: gene Location: 2970-3320 bp Feature: domain Description: DUF4133 Location: 2985-3255 bp Feature: domain Description: DUF41 33 Location: 2985-3255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WKMS01000015.1 Parabacteroides distasonis strain BIOML-A16 scaffold15_size123621, whole genome shotgun sequence (123621 bp)
Overview 1 RT 1: 30354-34303 bp Neighborhood of RT #1 [30354, 34303] RVT-DGRs Feature: gene Location: 30354-30644 bp Feature: gene Location: 30654-32015 bp Feature: gene Location: 32348-33535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32681-33308 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32 681-33308 bp Feature: gene Location: 33498-33926 bp Feature: gene Location: 33923-34303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WKMS01000149.1 Parabacteroides distasonis strain BIOML-A16 scaffold184_size4301, whole genome shotgun sequence (4301 bp)
Overview 1 RT 1: 1-2363 bp Neighborhood of RT #1 [1, 2363] RVT-DGRs Feature: gene Location: 1-141 bp Feature: gene Location: 152-1453 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 365-962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 65-962 bp Feature: gene Location: 1450-1935 bp Feature: gene Location: 2121-2363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WKMS01000001.1 Parabacteroides distasonis strain BIOML-A16 scaffold1_size424596, whole genome shotgun sequence (424596 bp)
Overview 1 RT 1: 155141-161088 bp 2 RT 2: 264790-269835 bp Neighborhood of RT #1 [155141, 161088] RVT-DGRs Neighborhood of RT #2 [264790, 269900] Hypoth_Ymh RVT-AbiP2 COG1373 DDE_Tnp_1 Feature: gene Location: 155141-158803 bp Feature: gene Location: 158990-159403 bp Feature: gene Location: 159387-160412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159597-160203 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159597-160203 bp Feature: gene Location: 160431-160691 bp Feature: gene Location: 160720-161088 bp Feature: gene Location: 264790-265056 bp Feature: gene Location: 265129-265923 bp Feature: domain Description: Hypoth_Ymh Location: 265546-265900 bp Feature: domain Description: Hypoth_Ymh Location: 26554 6-265900 bp Feature: gene Location: 265948-267471 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 266377-266833 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 266377-266833 bp Feature: gene Location: 267530-268789 bp Feature: domain Description: COG1373 Location: 267536-268769 bp Feature: domain Description: COG1373 Location: 267536-268769 bp Feature: gene Location: 268920-269900 bp Feature: domain Description: DDE_Tnp_1 Location: 269316-269835 bp Feature: domain Description: DDE_Tnp_1 Location: 269316-269835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), DDE_Tnp_1 (pfam01609)

Seq: WKMS01000157.1 Parabacteroides distasonis strain BIOML-A16 scaffold206_size3834, whole genome shotgun sequence (3834 bp)
Overview 1 RT 1: 1-3832 bp Neighborhood of RT #1 [1, 3832] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 1-387 bp Feature: domain Description: Phage_holin_4_1 Location: 88-385 bp Feature: domain Description: Phage_holin_4_1 Location: 88-385 bp Feature: gene Location: 389-760 bp Feature: gene Location: 738-1772 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 948-1560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 948-15 60 bp Feature: gene Location: 2029-2373 bp Feature: gene Location: 2417-3832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WKMS01000033.1 Parabacteroides distasonis strain BIOML-A16 scaffold33_size61362, whole genome shotgun sequence (61362 bp)
Overview 1 RT 1: 30759-34692 bp Neighborhood of RT #1 [30759, 34692] RVT-UG27 Feature: gene Location: 30759-31406 bp Feature: gene Location: 31420-32088 bp Feature: gene Location: 32081-33343 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 32273-32909 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 32273-32909 bp Feature: gene Location: 33666-34163 bp Feature: gene Location: 34213-34692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WKMS01000045.1 Parabacteroides distasonis strain BIOML-A16 scaffold45_size37575, whole genome shotgun sequence (37575 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WKMS01000051.1 Parabacteroides distasonis strain BIOML-A16 scaffold51_size22860, whole genome shotgun sequence (22860 bp)
Overview 1 RT 1: 9106-13232 bp Neighborhood of RT #1 [9106, 13261] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 9106-9333 bp Feature: domain Description: DUF4141 Location: 9118-9274 bp Feature: domain Description: DUF4141 Location: 9118 -9274 bp Feature: gene Location: 9373-9534 bp Feature: gene Location: 9854-11689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10148-10970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10148 -10970 bp Feature: domain Description: Intron_maturas2 Location: 11129-11498 bp Feature: domain Description: Intron_maturas2 Location: 11129-11498 bp Feature: domain Description: HNHc Note: nucleases Location: 11522-11663 bp Feature: domain Description: HNHc Note: nucleases Location: 11522-11663 bp Feature: gene Location: 11682-12218 bp Feature: gene Location: 12248-13261 bp Feature: domain Description: Bac_Flav_CT_J Location: 12269-13232 bp Feature: domain Description: Bac_Flav_CT_J Location: 12269-13232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: WKMS01000063.1 Parabacteroides distasonis strain BIOML-A16 scaffold63_size13860, whole genome shotgun sequence (13860 bp)
Overview 1 RT 1: 11497-13212 bp Neighborhood of RT #1 [11497, 13703] RVT-DGRs Feature: gene Location: 11497-11739 bp Feature: gene Location: 11920-12405 bp Feature: gene Location: 12402-13703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12615-13212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12615-13212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs