myRT

myRT report for GCA_009679555.1_ASM967955v1

Download annotations/find similar RTs

Seq: WKPK01000011.1 Holdemania massiliensis strain BIOML-A3 scaffold11_size90742, whole genome shotgun sequence (90742 bp)
Overview 1 RT 1: 35967-40956 bp Neighborhood of RT #1 [35967, 41126] RVT-GII Intron_maturas2 HNHc Rhs_assc_core PHA03100 Feature: gene Location: 35967-36584 bp Feature: gene Location: 36668-36883 bp Feature: gene Location: 37129-38961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37393-38224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37393-38224 bp Feature: domain Description: Intron_maturas2 Location: 38296-38611 bp Feature: domain Description: Intron_maturas2 Location: 38296-3861 1 bp Feature: domain Description: HNHc Note: nucleases Location: 38758-38932 bp Feature: domain Description: HNHc Note: nucleases Location: 38758-38932 bp Feature: gene Location: 39056-40063 bp Feature: domain Description: Rhs_assc_core Location: 39128-39371 bp Feature: domain Description: Rhs_assc_core Location: 391 28-39371 bp Feature: gene Location: 40605-41126 bp Feature: domain Description: PHA03100 Location: 40680-40956 bp Feature: domain Description: PHA031 00 Location: 40680-40956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Rhs_assc_core (TIGR03696), PHA03100 (ankyrin repeat protein; Provisional)

Seq: WKPK01000015.1 Holdemania massiliensis strain BIOML-A3 scaffold15_size82835, whole genome shotgun sequence (82959 bp)
Overview 1 RT 1: 44331-47180 bp Neighborhood of RT #1 [44331, 47180] Transposase_20 RVT-GII RVT-GII GIIM Feature: gene Location: 44331-44561 bp Feature: gene Location: 44571-44969 bp Feature: domain Description: Transposase_20 Location: 44673-44934 bp Feature: domain Description: Transposase_2 0 Location: 44673-44934 bp Feature: gene Location: 45736-46185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45877-46168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45877-46168 bp Feature: gene Location: 46270-46575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46279-46456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 79-46456 bp Feature: gene Location: 46560-46808 bp Feature: domain Description: GIIM Note: maturase Location: 46566-46719 bp Feature: domain Description: GIIM Note: maturase Location: 46566-46719 bp Feature: gene Location: 46998-47180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388)

Seq: WKPK01000047.1 Holdemania massiliensis strain BIOML-A3 scaffold47_size28547, whole genome shotgun sequence (28547 bp)
Overview 1 RT 1: 21676-26729 bp Neighborhood of RT #1 [21676, 26776] COG2768 Hit RVT-GII GIIM MATE_yoeA_like Feature: gene Location: 21676-22782 bp Feature: domain Description: COG2768 Location: 21688-22777 bp Feature: domain Description: COG2768 Location: 21688-22777 bp Feature: gene Location: 22795-23205 bp Feature: domain Description: Hit Location: 22798-23155 bp Feature: domain Description: Hit Location: 22798-23 155 bp Feature: gene Location: 23369-24655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23690-24314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 690-243 14 bp Feature: domain Description: GIIM Note: maturase Location: 24371-24599 bp Feature: domain Description: GIIM Note: maturase Location: 243 71-24599 bp Feature: gene Location: 24893-25102 bp Feature: gene Location: 25388-26776 bp Feature: domain Description: MATE_yoeA_like Location: 25439-26729 bp Feature: domain Description: MATE_yoeA_like Location: 2543 9-26729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2768 (Uncharacterized Fe-S cluster protein ), Hit (COG0537), RVT-GII, GIIM (pfam08388), MATE_yoeA_like (cd13138)

Seq: WKPK01000078.1 Holdemania massiliensis strain BIOML-A3 scaffold78_size2505, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 8-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 1739-204 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKPK01000007.1 Holdemania massiliensis strain BIOML-A3 scaffold7_size107582, whole genome shotgun sequence (107582 bp)
Overview 1 RT 1: 33829-40196 bp Neighborhood of RT #1 [33829, 40201] TPR_8 SLATT_5 RVT-UG17 DHFR_1 PLN02563 PLN02563 Feature: gene Location: 33829-33963 bp Feature: domain Description: TPR_8 Location: 33862-33931 bp Feature: domain Description: TPR_8 Location: 33862-33931 bp Feature: gene Location: 34308-34874 bp Feature: domain Description: SLATT_5 Location: 34326-34854 bp Feature: domain Description: SLATT_5 Location: 34326-3485 4 bp Feature: gene Location: 34880-36208 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 35108-35702 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 35 108-35 702 bp Feature: gene Location: 37222-37698 bp Feature: domain Description: DHFR_1 Location: 37228-37657 bp Feature: domain Description: DHFR_1 Location: 37228-3765 7 bp Feature: gene Location: 37799-40201 bp Feature: domain Description: PLN02563 Location: 37805-39512 bp Feature: domain Description: PLN025 63 Location: 37805 -395 12 bp Feature: domain Description: PLN02563 Location: 39524-40196 bp Feature: domain Description: PLN025 63 Location: 395 24-40196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_8 (pfam13181), SLATT_5 (pfam18160), RVT-UG17, DHFR_1 (pfam00186), PLN02563 (aminoacyl-tRNA ligase)