myRT

myRT report for GCA_009679855.1_ASM967985v1

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Seq: WKQA01000001.1 Faecalibacterium prausnitzii strain BIOML-B13 scaffold1_size443691, whole genome shotgun sequence (443577 bp)
Overview 1 RT 1: 111199-115314 bp 2 RT 2: 371444-375696 bp Neighborhood of RT #1 [111199, 115314] RVT-DGRs bZIP_CREB1 Neighborhood of RT #2 [371444, 375839] Maff2 RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Feature: gene Location: 111199-112938 bp Feature: gene Location: 113016-113147 bp Feature: gene Location: 113381-114619 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 113675-114266 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 3675-1 1 4266 bp Feature: gene Location: 114616-115002 bp Feature: domain Description: bZIP_CREB1 Location: 114871-114955 bp Feature: domain Description: bZIP_CREB1 Location: 1 1 4871 -1 1 4955 bp Feature: gene Location: 115141-115314 bp Feature: gene Location: 371444-371659 bp Feature: domain Description: Maff2 Location: 371447-371654 bp Feature: domain Description: Maff2 Location: 371 447-371 654 bp Feature: gene Location: 371701-372369 bp Feature: gene Location: 372945-374777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373209-374040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373209-374040 bp Feature: domain Description: Intron_maturas2 Location: 374112-374427 bp Feature: domain Description: Intron_maturas2 Location: 3741 1 2-374427 bp Feature: domain Description: HNHc Note: nucleases Location: 374574-374748 bp Feature: domain Description: HNHc Note: nucleases Location: 374574-374748 bp Feature: gene Location: 374940-375155 bp Feature: gene Location: 375198-375839 bp Feature: domain Description: LPD26 Location: 375228-375393 bp Feature: domain Description: LPD26 Location: 375228-375393 bp Feature: domain Description: SpoVG Location: 375465-375696 bp Feature: domain Description: SpoVG Location: 375465-375696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, bZIP_CREB1 (cd14690), Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), LPD26 (pfam18842), SpoVG (pfam04026)

Seq: WKQA01000002.1 Faecalibacterium prausnitzii strain BIOML-B13 scaffold2_size369696, whole genome shotgun sequence (369696 bp)
Overview 1 RT 1: 102184-105861 bp Neighborhood of RT #1 [102184, 105956] Phage_XkdX RVT-DGRs DUF3751 Feature: gene Location: 102184-102333 bp Feature: domain Description: Phage_XkdX Location: 102220-102322 bp Feature: domain Description: Phage_XkdX Location: 102 2 2 0-102 32 2 bp Feature: gene Location: 102336-102599 bp Feature: gene Location: 102559-103713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102802-103423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102 802 -10342 3 bp Feature: gene Location: 104158-105405 bp Feature: gene Location: 105405-105956 bp Feature: domain Description: DUF3751 Location: 105429-105861 bp Feature: domain Description: DUF3751 Location: 10542 9-105861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, DUF3751 (pfam12571)

Seq: WKQA01000003.1 Faecalibacterium prausnitzii strain BIOML-B13 scaffold3_size200325, whole genome shotgun sequence (200325 bp)
Overview 1 RT 1: 193255-196899 bp Neighborhood of RT #1 [193255, 196899] Avd_like RVT-DGRs Feature: gene Location: 193255-193830 bp Feature: domain Description: Avd_like Location: 193462-193732 bp Feature: domain Description: Avd_like Location: 193 462-193 73 2 bp Feature: gene Location: 193873-194025 bp Feature: gene Location: 194172-195401 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194406-195021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194406-195021 bp Feature: gene Location: 195422-196681 bp Feature: gene Location: 196696-196899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: WKQA01000052.1 Faecalibacterium prausnitzii strain BIOML-B13 scaffold52_size6921, whole genome shotgun sequence (6765 bp)
Overview 1 RT 1: 85-6438 bp Neighborhood of RT #1 [85, 6438] RVT_N RVT-GII GIIM COG4646 KOG0390 HNHc RVT-GII Feature: gene Location: 85-1776 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 18-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: gene Location: 1834-2019 bp Feature: gene Location: 2366-3442 bp Feature: domain Description: COG4646 Location: 2378-2948 bp Feature: domain Description: COG4 64 6 Location: 2378-294 8 bp Feature: domain Description: KOG0390 Location: 3215-3428 bp Feature: domain Description: KOG0390 Location: 3215-34 28 bp Feature: gene Location: 3651-4226 bp Feature: domain Description: HNHc Note: nucleases Location: 3978-4149 bp Feature: domain Description: HNHc Note: nucleases Location: 3978-4 14 9 bp Feature: gene Location: 4196-6046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4520-5234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 520-5234 bp Feature: gene Location: 6076-6438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)