myRT

myRT report for GCA_009679895.1_ASM967989v1

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Seq: WKQD01000001.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold1_size444815, whole genome shotgun sequence (444815 bp)
Overview 1 RT 1: 338860-342621 bp Neighborhood of RT #1 [338860, 342632] DUF3751 RVT-DGRs Phage_XkdX Feature: gene Location: 338860-339411 bp Feature: domain Description: DUF3751 Location: 338884-339316 bp Feature: domain Description: DUF3751 Location: 338884-33931 6 bp Feature: gene Location: 339411-340658 bp Feature: gene Location: 341103-342257 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 341346-341967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 341 346-341 967 bp Feature: gene Location: 342217-342480 bp Feature: gene Location: 342483-342632 bp Feature: domain Description: Phage_XkdX Location: 342519-342621 bp Feature: domain Description: Phage_XkdX Location: 34251 9-342621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: WKQD01000023.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold23_size71263, whole genome shotgun sequence (71175 bp)
Overview 1 RT 1: 2-3294 bp Neighborhood of RT #1 [2, 3437] RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Feature: gene Location: 2-130 bp Feature: gene Location: 552-2375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-1638 bp Feature: domain Description: Intron_maturas2 Location: 1710-2025 bp Feature: domain Description: Intron_maturas2 Location: 1710-2 02 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2172-2346 bp Feature: domain Description: HNHc Note: nucleases Location: 2 172 -2 346 bp Feature: gene Location: 2451-2753 bp Feature: gene Location: 2796-3437 bp Feature: domain Description: LPD26 Location: 2826-2991 bp Feature: domain Description: LPD2 6 Location: 2 82 6-2 991 bp Feature: domain Description: SpoVG Location: 3063-3294 bp Feature: domain Description: SpoVG Location: 3063-32 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD26 (pfam18842), SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKQD01000029.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold29_size32089, whole genome shotgun sequence (32089 bp)
Overview 1 RT 1: 3398-6944 bp Neighborhood of RT #1 [3398, 7042] RVT-DGRs Avd_like Feature: gene Location: 3398-3601 bp Feature: gene Location: 3616-4875 bp Feature: gene Location: 4896-6125 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5130-5745 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 513 0-5745 bp Feature: gene Location: 6272-6424 bp Feature: gene Location: 6467-7042 bp Feature: domain Description: Avd_like Location: 6674-6944 bp Feature: domain Description: Avd_like Location: 6674-6944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: WKQD01000054.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold54_size3057, whole genome shotgun sequence (3057 bp)
Overview 1 RT 1: 3-2990 bp Neighborhood of RT #1 [3, 3055] RVT-GII T4SS-DNA_transf Feature: gene Location: 3-188 bp Feature: gene Location: 208-2118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1282 bp Feature: gene Location: 2744-3055 bp Feature: domain Description: T4SS-DNA_transf Location: 2825-2990 bp Feature: domain Description: T4 SS-DNA_transf Location: 2825-2990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: WKQD01000057.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold57_size3529, whole genome shotgun sequence (3529 bp)
Overview 1 RT 1: 85-3512 bp Neighborhood of RT #1 [85, 3526] RVT_N RVT-GII GIIM COG4646 KOG0390 Feature: gene Location: 85-1776 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1126-135 4 bp Feature: gene Location: 1834-2019 bp Feature: gene Location: 2366-3526 bp Feature: domain Description: COG4646 Location: 2459-3032 bp Feature: domain Description: COG4646 Location: 245 9-3032 bp Feature: domain Description: KOG0390 Location: 3302-3512 bp Feature: domain Description: KOG0390 Location: 3302-35 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WKQD01000061.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold61_size2236, whole genome shotgun sequence (2236 bp)
Overview 1 RT 1: 720-1758 bp Neighborhood of RT #1 [720, 2234] RVT-GII Feature: gene Location: 720-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WKQD01000007.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold7_size107362, whole genome shotgun sequence (107362 bp)
Overview 1 RT 1: 46793-50908 bp Neighborhood of RT #1 [46793, 50908] RVT-DGRs bZIP_CREB1 Feature: gene Location: 46793-48532 bp Feature: gene Location: 48539-48838 bp Feature: gene Location: 48975-50213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49269-49860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49269-49860 bp Feature: gene Location: 50210-50596 bp Feature: domain Description: bZIP_CREB1 Location: 50465-50549 bp Feature: domain Description: bZIP_CREB1 Location: 50465-50549 bp Feature: gene Location: 50735-50908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, bZIP_CREB1 (cd14690)

Seq: WKQD01000088.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold88_size1027, whole genome shotgun sequence (1027 bp)
Overview 1 RT 1: 2-998 bp Neighborhood of RT #1 [2, 1024] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-1024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89-308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 9-308 bp Feature: domain Description: Intron_maturas2 Location: 377-653 bp Feature: domain Description: Intron_maturas2 Location: 377-653 bp Feature: domain Description: HNHc Note: nucleases Location: 845-998 bp Feature: domain Description: HNHc Note: nucleases Location: 8 45-998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKQD01000090.1 Faecalibacterium prausnitzii strain BIOML-B10 scaffold90_size1659, whole genome shotgun sequence (1620 bp)
Overview 1 RT 1: 181-1588 bp Neighborhood of RT #1 [181, 1617] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 181-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187-880 bp Feature: domain Description: Intron_maturas2 Location: 952-1267 bp Feature: domain Description: Intron_maturas2 Location: 9 52-1267 bp Feature: domain Description: HNHc Note: nucleases Location: 1414-1588 bp Feature: domain Description: HNHc Note: nucleases Location: 1414-1588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)