myRT

myRT report for GCA_009679955.1_ASM967995v1

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Seq: WKQG01000016.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold16_size115612, whole genome shotgun sequence (115792 bp)
Overview 1 RT 1: 3427-6973 bp Neighborhood of RT #1 [3427, 7071] RVT-DGRs Avd_like Feature: gene Location: 3427-3630 bp Feature: gene Location: 3645-4904 bp Feature: gene Location: 4925-6154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5159-5774 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51 59-5774 bp Feature: gene Location: 6301-6453 bp Feature: gene Location: 6496-7071 bp Feature: domain Description: Avd_like Location: 6703-6973 bp Feature: domain Description: Avd_like Location: 6703-6973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: WKQG01000001.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold1_size453364, whole genome shotgun sequence (453364 bp)
Overview 1 RT 1: 192093-196208 bp Neighborhood of RT #1 [192093, 196208] RVT-DGRs bZIP_CREB1 Feature: gene Location: 192093-193832 bp Feature: gene Location: 193910-194041 bp Feature: gene Location: 194275-195513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194569-195160 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194569-195160 bp Feature: gene Location: 195510-195896 bp Feature: domain Description: bZIP_CREB1 Location: 195765-195849 bp Feature: domain Description: bZIP_CREB1 Location: 195765-195849 bp Feature: gene Location: 196035-196208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, bZIP_CREB1 (cd14690)

Seq: WKQG01000022.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold22_size71257, whole genome shotgun sequence (71175 bp)
Overview 1 RT 1: 2-3294 bp Neighborhood of RT #1 [2, 3437] RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Feature: gene Location: 2-130 bp Feature: gene Location: 552-2375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-163 8 bp Feature: domain Description: Intron_maturas2 Location: 1710-2025 bp Feature: domain Description: Intron_maturas2 Location: 1710-2025 bp Feature: domain Description: HNHc Note: nucleases Location: 2172-2346 bp Feature: domain Description: HNHc Note: nucleases Location: 2172-23 46 bp Feature: gene Location: 2451-2753 bp Feature: gene Location: 2796-3437 bp Feature: domain Description: LPD26 Location: 2826-2991 bp Feature: domain Description: LPD26 Location: 2826-2991 bp Feature: domain Description: SpoVG Location: 3063-3294 bp Feature: domain Description: SpoVG Location: 3 063 -3 294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD26 (pfam18842), SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKQG01000002.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold2_size417578, whole genome shotgun sequence (417578 bp)
Overview 1 RT 1: 102184-105405 bp 2 RT 2: 207738-213105 bp Neighborhood of RT #1 [102184, 105405] Phage_XkdX RVT-DGRs Neighborhood of RT #2 [207738, 213110] DUF3801 DUF3801 VirD4 RVT-GII Intron_maturas2 TraG-D_C Maff2 Feature: gene Location: 102184-102333 bp Feature: domain Description: Phage_XkdX Location: 102220-102322 bp Feature: domain Description: Phage_XkdX Location: 102220-102322 bp Feature: gene Location: 102336-102599 bp Feature: gene Location: 102559-103713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102802-103423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102802-1034 23 bp Feature: gene Location: 103653-103913 bp Feature: gene Location: 104158-105405 bp Feature: gene Location: 207738-208238 bp Feature: domain Description: DUF3801 Location: 207807-208116 bp Feature: domain Description: DUF3801 Location: 207807-208116 bp Feature: domain Description: DUF3801 Location: 208131-208218 bp Feature: domain Description: DUF3801 Location: 208131-208218 bp Feature: gene Location: 208235-209761 bp Feature: domain Description: VirD4 Location: 208505-209732 bp Feature: domain Description: VirD4 Location: 208505-209732 bp Feature: gene Location: 210467-212140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210587-211421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210587-2114 21 bp Feature: domain Description: Intron_maturas2 Location: 211505-211892 bp Feature: domain Description: Intron_maturas2 Location: 211505-211892 bp Feature: gene Location: 212254-212646 bp Feature: domain Description: TraG-D_C Location: 212260-212434 bp Feature: domain Description: TraG-D_C Location: 212260-2124 34 bp Feature: gene Location: 212895-213110 bp Feature: domain Description: Maff2 Location: 212898-213105 bp Feature: domain Description: Maff2 Location: 212898-213105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: WKQG01000053.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold53_size3057, whole genome shotgun sequence (3057 bp)
Overview 1 RT 1: 3-2990 bp Neighborhood of RT #1 [3, 3055] RVT-GII T4SS-DNA_transf Feature: gene Location: 3-188 bp Feature: gene Location: 208-2118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 38-1282 bp Feature: gene Location: 2744-3055 bp Feature: domain Description: T4SS-DNA_transf Location: 2825-2990 bp Feature: domain Description: T4SS-DNA_transf Location: 2825 -2990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: WKQG01000055.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold55_size4544, whole genome shotgun sequence (4792 bp)
Overview 1 RT 1: 85-3410 bp Neighborhood of RT #1 [85, 3424] RVT_N RVT-GII GIIM COG4646 KOG0390 Feature: gene Location: 85-1776 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-106 6 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1126 -1354 bp Feature: gene Location: 1834-2019 bp Feature: gene Location: 2366-3424 bp Feature: domain Description: COG4646 Location: 2369-2930 bp Feature: domain Description: COG46 46 Location: 236 9-2930 bp Feature: domain Description: KOG0390 Location: 3197-3410 bp Feature: domain Description: KOG0390 Location: 3197-3410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WKQG01000061.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold61_size2236, whole genome shotgun sequence (2236 bp)
Overview 1 RT 1: 720-1758 bp Neighborhood of RT #1 [720, 2234] RVT-GII Feature: gene Location: 720-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-17 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WKQG01000090.1 Faecalibacterium prausnitzii strain BIOML-B7 scaffold90_size3285, whole genome shotgun sequence (3171 bp)
Overview 1 RT 1: 740-3139 bp Neighborhood of RT #1 [740, 3168] SpoVG RVT-GII Intron_maturas2 HNHc Feature: gene Location: 740-1192 bp Feature: domain Description: SpoVG Location: 812-1043 bp Feature: domain Description: SpoVG Location: 8 12-1043 bp Feature: gene Location: 1231-1446 bp Feature: gene Location: 1609-3168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1612-2431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1612-2431 bp Feature: domain Description: Intron_maturas2 Location: 2503-2818 bp Feature: domain Description: Intron_maturas2 Location: 2503-28 18 bp Feature: domain Description: HNHc Note: nucleases Location: 2965-3139 bp Feature: domain Description: HNHc Note: nucleases Location: 2965-3139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SpoVG (pfam04026)