myRT

myRT report for GCA_009679965.1_ASM967996v1

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Seq: WKQF01000001.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold1_size453439, whole genome shotgun sequence (453439 bp)
Overview 1 RT 1: 257232-261347 bp Neighborhood of RT #1 [257232, 261347] bZIP_CREB1 RVT-DGRs Feature: gene Location: 257232-257405 bp Feature: gene Location: 257544-257930 bp Feature: domain Description: bZIP_CREB1 Location: 257799-257883 bp Feature: domain Description: bZIP_CREB1 Location: 257799-257883 bp Feature: gene Location: 257927-259165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 258221-258812 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 258221 -25881 2 bp Feature: gene Location: 259399-259530 bp Feature: gene Location: 259608-261347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_CREB1 (cd14690), RVT-DGRs

Seq: WKQF01000022.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold22_size71353, whole genome shotgun sequence (71407 bp)
Overview 1 RT 1: 784-3526 bp Neighborhood of RT #1 [784, 3669] RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Feature: gene Location: 784-2607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1870 bp Feature: domain Description: Intron_maturas2 Location: 1942-2257 bp Feature: domain Description: Intron_maturas2 Location: 1942 -2 2 57 bp Feature: domain Description: HNHc Note: nucleases Location: 2404-2578 bp Feature: domain Description: HNHc Note: nucleases Location: 2 404-2 578 bp Feature: gene Location: 2683-2985 bp Feature: gene Location: 3028-3669 bp Feature: domain Description: LPD26 Location: 3058-3223 bp Feature: domain Description: LPD2 6 Location: 3058-32 2 3 bp Feature: domain Description: SpoVG Location: 3295-3526 bp Feature: domain Description: SpoVG Location: 32 95-352 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD26 (pfam18842), SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKQF01000028.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold28_size31055, whole genome shotgun sequence (31055 bp)
Overview 1 RT 1: 3427-6973 bp Neighborhood of RT #1 [3427, 7071] RVT-DGRs Avd_like Feature: gene Location: 3427-3630 bp Feature: gene Location: 3645-4904 bp Feature: gene Location: 4925-6154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5159-5774 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5159-5774 bp Feature: gene Location: 6301-6453 bp Feature: gene Location: 6496-7071 bp Feature: domain Description: Avd_like Location: 6703-6973 bp Feature: domain Description: Avd_like Location: 6703 -6973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: WKQF01000002.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold2_size417577, whole genome shotgun sequence (417577 bp)
Overview 1 RT 1: 102184-105405 bp 2 RT 2: 207739-213106 bp Neighborhood of RT #1 [102184, 105405] Phage_XkdX RVT-DGRs Neighborhood of RT #2 [207739, 213111] DUF3801 DUF3801 VirD4 RVT-GII Intron_maturas2 TraG-D_C Maff2 Feature: gene Location: 102184-102333 bp Feature: domain Description: Phage_XkdX Location: 102220-102322 bp Feature: domain Description: Phage_XkdX Location: 102220-102322 bp Feature: gene Location: 102336-102599 bp Feature: gene Location: 102559-103713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102802-103423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102802-1034 23 bp Feature: gene Location: 103653-103913 bp Feature: gene Location: 104158-105405 bp Feature: gene Location: 207739-208239 bp Feature: domain Description: DUF3801 Location: 207808-208117 bp Feature: domain Description: DUF3801 Location: 207808-208117 bp Feature: domain Description: DUF3801 Location: 208132-208219 bp Feature: domain Description: DUF3801 Location: 208132-208219 bp Feature: gene Location: 208236-209762 bp Feature: domain Description: VirD4 Location: 208506-209733 bp Feature: domain Description: VirD4 Location: 208506-209733 bp Feature: gene Location: 210468-212141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210588-211422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210588-2114 22 bp Feature: domain Description: Intron_maturas2 Location: 211506-211893 bp Feature: domain Description: Intron_maturas2 Location: 211506-211893 bp Feature: gene Location: 212255-212647 bp Feature: domain Description: TraG-D_C Location: 212261-212435 bp Feature: domain Description: TraG-D_C Location: 212261-2124 35 bp Feature: gene Location: 212896-213111 bp Feature: domain Description: Maff2 Location: 212899-213106 bp Feature: domain Description: Maff2 Location: 212899-213106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: WKQF01000052.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold52_size3057, whole genome shotgun sequence (3057 bp)
Overview 1 RT 1: 3-2990 bp Neighborhood of RT #1 [3, 3055] RVT-GII T4SS-DNA_transf Feature: gene Location: 3-188 bp Feature: gene Location: 208-2118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 38-1282 bp Feature: gene Location: 2744-3055 bp Feature: domain Description: T4SS-DNA_transf Location: 2825-2990 bp Feature: domain Description: T4SS-DNA_transf Location: 2825 -2990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: WKQF01000055.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold55_size3529, whole genome shotgun sequence (3529 bp)
Overview 1 RT 1: 85-3512 bp Neighborhood of RT #1 [85, 3526] RVT_N RVT-GII GIIM COG4646 KOG0390 Feature: gene Location: 85-1776 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-106 6 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1126 -1354 bp Feature: gene Location: 1834-2019 bp Feature: gene Location: 2366-3526 bp Feature: domain Description: COG4646 Location: 2459-3032 bp Feature: domain Description: COG46 46 Location: 2459-3032 bp Feature: domain Description: KOG0390 Location: 3302-3512 bp Feature: domain Description: KOG0390 Location: 3302-3512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WKQF01000059.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold59_size2236, whole genome shotgun sequence (2236 bp)
Overview 1 RT 1: 720-1758 bp Neighborhood of RT #1 [720, 2234] RVT-GII Feature: gene Location: 720-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-17 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WKQF01000071.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold71_size9117, whole genome shotgun sequence (9260 bp)
Overview 1 RT 1: 6952-9228 bp Neighborhood of RT #1 [6952, 9257] SpoVG RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6952-7404 bp Feature: domain Description: SpoVG Location: 7024-7255 bp Feature: domain Description: SpoVG Location: 7024-7255 bp Feature: gene Location: 7443-7658 bp Feature: gene Location: 7821-9257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7827-8520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 27-8 520 bp Feature: domain Description: Intron_maturas2 Location: 8592-8907 bp Feature: domain Description: Intron_maturas2 Location: 8 592-8 907 bp Feature: domain Description: HNHc Note: nucleases Location: 9054-9228 bp Feature: domain Description: HNHc Note: nucleases Location: 9054-9228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WKQF01000090.1 Faecalibacterium prausnitzii strain BIOML-B8 scaffold92_size1620, whole genome shotgun sequence (1538 bp)
Overview 1 RT 1: 598-1534 bp Neighborhood of RT #1 [598, 1536] RVT-GII Feature: gene Location: 598-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII