myRT

myRT report for GCA_009680005.1_ASM968000v1

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Seq: WKQH01000104.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold104_size1014, whole genome shotgun sequence (1014 bp)
Overview 1 RT 1: 1-823 bp Neighborhood of RT #1 [1, 1011] RVT-GII Feature: gene Location: 1-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WKQH01000019.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold19_size70478, whole genome shotgun sequence (70363 bp)
Overview 1 RT 1: 1-2482 bp Neighborhood of RT #1 [1, 2625] RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Feature: gene Location: 1-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-82 6 bp Feature: domain Description: Intron_maturas2 Location: 898-1213 bp Feature: domain Description: Intron_maturas2 Location: 898-12 13 bp Feature: domain Description: HNHc Note: nucleases Location: 1360-1534 bp Feature: domain Description: HNHc Note: nucleases Location: 1360-1534 bp Feature: gene Location: 1639-1941 bp Feature: gene Location: 1984-2625 bp Feature: domain Description: LPD26 Location: 2014-2179 bp Feature: domain Description: LPD2 6 Location: 2 014-2 179 bp Feature: domain Description: SpoVG Location: 2251-2482 bp Feature: domain Description: SpoVG Location: 2 2 51-2 482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), LPD26 (pfam18842), SpoVG (pfam04026)

Seq: WKQH01000001.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold1_size469132, whole genome shotgun sequence (469132 bp)
Overview 1 RT 1: 360903-364664 bp Neighborhood of RT #1 [360903, 364675] DUF3751 RVT-DGRs Phage_XkdX Feature: gene Location: 360903-361454 bp Feature: domain Description: DUF3751 Location: 360927-361359 bp Feature: domain Description: DUF3 751 Location: 3 60927-3 613 59 bp Feature: gene Location: 361454-362701 bp Feature: gene Location: 363146-364300 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 363389-364010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 63 3 89-3 64010 bp Feature: gene Location: 364260-364523 bp Feature: gene Location: 364526-364675 bp Feature: domain Description: Phage_XkdX Location: 364562-364664 bp Feature: domain Description: Phage_XkdX Location: 3 64562-3 64664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: WKQH01000002.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold2_size327831, whole genome shotgun sequence (327831 bp)
Overview 1 RT 1: 247710-251825 bp 2 RT 2: 300202-303748 bp Neighborhood of RT #1 [247710, 251825] bZIP_CREB1 RVT-DGRs Neighborhood of RT #2 [300202, 303846] RVT-DGRs Avd_like Feature: gene Location: 247710-247883 bp Feature: gene Location: 248022-248408 bp Feature: domain Description: bZIP_CREB1 Location: 248277-248361 bp Feature: domain Description: bZIP_CREB1 Location: 24 8277-24 8361 bp Feature: gene Location: 248405-249643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248699-249290 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24 8699-24 9290 bp Feature: gene Location: 249877-250008 bp Feature: gene Location: 250086-251825 bp Feature: gene Location: 300202-300405 bp Feature: gene Location: 300420-301679 bp Feature: gene Location: 301700-302929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 301934-302549 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 301934 -30254 9 bp Feature: gene Location: 303076-303228 bp Feature: gene Location: 303271-303846 bp Feature: domain Description: Avd_like Location: 303478-303748 bp Feature: domain Description: Avd_like Location: 3034 78-30374 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_CREB1 (cd14690), RVT-DGRs, Avd_like (cd16376)

Seq: WKQH01000047.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold47_size6286, whole genome shotgun sequence (6286 bp)
Overview 1 RT 1: 85-5959 bp Neighborhood of RT #1 [85, 5959] RVT_N RVT-GII GIIM COG4646 KOG0390 RVT-GII HNHc Feature: gene Location: 85-1776 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1354 bp Feature: domain Description: GIIM Note: maturase Location: 1126-135 4 bp Feature: gene Location: 1834-2019 bp Feature: gene Location: 2366-3424 bp Feature: domain Description: COG4646 Location: 2369-2930 bp Feature: domain Description: COG4646 Location: 2369-2930 bp Feature: domain Description: KOG0390 Location: 3197-3410 bp Feature: domain Description: KOG0390 Location: 3197-3410 bp Feature: gene Location: 3651-5567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3975-4689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3975 -4689 bp Feature: domain Description: HNHc Note: nucleases Location: 5319-5490 bp Feature: domain Description: HNHc Note: nucleases Location: 5 319-5 490 bp Feature: gene Location: 5597-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WKQH01000060.1 Faecalibacterium prausnitzii strain BIOML-B6 scaffold60_size3311, whole genome shotgun sequence (3311 bp)
Overview 1 RT 1: 3-3244 bp Neighborhood of RT #1 [3, 3309] RVT-GII T4SS-DNA_transf Feature: gene Location: 3-224 bp Feature: gene Location: 265-420 bp Feature: gene Location: 444-2354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1518 bp Feature: gene Location: 2980-3309 bp Feature: domain Description: T4SS-DNA_transf Location: 3079-3244 bp Feature: domain Description: T4SS-DNA_transf Location: 3079-3244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII